Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	1257829	1257877	49	2 [0]	[0] 2	h16_A1156	Site‑specific recombinase

AACTGTTCCGCAAATGGCGCGAATCGCGCAATGCAAGCCTGCAGCTCGACGCCATCCTGGCCG  >  AM260479/1257766‑1257828                                                               | aaCTGTTCCGCAAATGGCGCGAATCGCGCAATGCAAGCCTGCAGCTCGACGCCATCCTGGCCg  <  1:287561/63‑1 (MQ=255) aaCTGTTCCGCAAATGGCGCGAATCGCGCAATGCAAGCCTGCAGCTCGACGCCATCCTGGCCg  >  2:287561/1‑63 (MQ=255)                                                               | AACTGTTCCGCAAATGGCGCGAATCGCGCAATGCAAGCCTGCAGCTCGACGCCATCCTGGCCG  >  AM260479/1257766‑1257828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑