Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	1257829	1257877	49	2 [0]	[0] 2	h16_A1156	Site‑specific recombinase

GTTGGGCTTCTGGATCCGCCGCGATGGCGGGCTGGGCGCCGATA  >  AM260479/1257878‑1257921 |                                            gTTGGGCTTCTGGATCCGCCGCGATGGCGGGCTGGGCGCCGATa  >  1:63643/1‑44 (MQ=255) gTTGGGCTTCTGGATCCGCCGCGATGGCGGGCTGGGCGCCGATa  <  2:63643/44‑1 (MQ=255) |                                            GTTGGGCTTCTGGATCCGCCGCGATGGCGGGCTGGGCGCCGATA  >  AM260479/1257878‑1257921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑