Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	1381165	1381216	52	2 [0]	[0] 2	h16_A1272	conserved hypothetical protein

GCGGCGCGGCGTCGCAGCGCGACTTTGATCGCGGACGCTCCAGCATGCAGTCGGCCGGAGGC  >  AM260479/1381103‑1381164                                                              | gcggcgcggcGTCGCAGCGCGACTTTGATCGCGGACGCTCCAGCATGCAGTCGGCCGGAGGc  <  1:528926/62‑1 (MQ=255) gcggcgcggcGTCGCAGCGCGACTTTGATCGCGGACGCTCCAGCATGCAGTCGGCCGGAGGc  >  2:528926/1‑62 (MQ=255)                                                              | GCGGCGCGGCGTCGCAGCGCGACTTTGATCGCGGACGCTCCAGCATGCAGTCGGCCGGAGGC  >  AM260479/1381103‑1381164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑