Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	1381165	1381216	52	2 [0]	[0] 2	h16_A1272	conserved hypothetical protein

GCGGCGGGGGCCGTGGCGGTGGCGGACGCGGTGGCAGGCGCTAGCGGACCAGGGAGCCTCGA  >  AM260479/1381217‑1381278 |                                                              gcggcggGGGCCGTGGCGGTGGCGGACGCGGTGGCAGGCGCTAGCGGACCAGGGAGCCTCGa  >  1:934721/1‑62 (MQ=255) gcggcggGGGCCGTGGCGGTGGCGGACGCGGTGGCAGGCGCTAGCGGACCAGGGAGCCTCGa  <  2:934721/62‑1 (MQ=255) |                                                              GCGGCGGGGGCCGTGGCGGTGGCGGACGCGGTGGCAGGCGCTAGCGGACCAGGGAGCCTCGA  >  AM260479/1381217‑1381278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑