| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 4014119 | 20 (0.750) | 7 (0.280) | 7/198 | 1.3 | 23.9% | coding (2400/3198 nt) | acrB7a | Cation/multidrug efflux pump |
| ? | AM260479 | = 4014127 | 26 (1.060) | coding (2408/3198 nt) | acrB7a | Cation/multidrug efflux pump | |||||
GGCCTTCGGCGAGCGGCAGGTGTCGACCATCTATACGCCGATCGACAACTACTACGTGATCCTGCAGGCGGCCGATGTCGACCGCACCGACGAGAGCGCGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/4013987‑4014119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaccggcACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGCAGGATCACGTAGTAGTTGTCGATCGGCGTATAGATGGTCGACACCTGCCGCT < AM260479/4014127‑4013998 GGCCTTCGGCGAGCGGCAGGTGTCGACCATCTATACGCCGATCGACAACTACTACGTGATCCTGCAGGCGGCCGATGTCGACCGCACCGACGAGAGCGCGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGC < 1:1046098/133‑1GGCCTTCGGCGAGCGGCAGGTGTCGACCATCTATACGCCGATCGACAACTACTACGTGATCCTGCAGGCGGCCGATGTCGACCGCACCGACGAGAGCGCGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGC < 2:58716/133‑1 TACGCCGATCGACAACTACTACGTGATCCTGCAGGCGGCCGATGTCGACCGCACCGACGAGAGCGCGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGCACCATCTGGCCGGTCTTGCTGCGCACATAGAG < 1:897973/132‑1 TGCAGGCGGCCGATGTCGACCGCACCGACGAGAGCGCGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGC < 1:621688/71‑1 TGCAGGCGGCCGATGTCGACCGCACCGACGAGAGCGCGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGC > 2:621688/1‑71 CGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGCACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGCAGGATCACGTAGTAGTTGT < 1:909055/132‑1 CGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGCACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGCAGGATCACGTAGTAGTTGT > 2:909055/1‑132 TGCGCAGCAAGACCGGCACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGC < 1:485657/95‑1 TGCGCAGCAAGACCGGCACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGC > 2:485657/1‑95 GCGCAGCAAGACCGGCACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGCAGGATCACGTAGTAGTTGTCGA < 1:889986/116‑1 GCGCAGCAAGACCGGCACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGCAGGATCACGTAGTAGTTGTCGA > 2:889986/1‑116 CGGCACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGCAGGATCACGTAGTAGTTGTCGATCGGCGTATAGATGGTCGACACCTGCCGCT > 1:195103/1‑134 GGCCTTCGGCGAGCGGCAGGTGTCGACCATCTATACGCCGATCGACAACTACTACGTGATCCTGCAGGCGGCCGATGTCGACCGCACCGACGAGAGCGCGTTCTCCAAGCTCTATGTGCGCAGCAAGACCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/4013987‑4014119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaccggcACCATCTGGCCGGTCTTGCTGCGCACATAGAGCTTGGAGAACGCGCTCTCGTCGGTGCGGTCGACATCGGCCGCCTGCAGGATCACGTAGTAGTTGTCGATCGGCGTATAGATGGTCGACACCTGCCGCT < AM260479/4014127‑4013998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |