New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1885521	22 (0.750)	8 (0.290)	7/198	1.5	31.2%	coding (74/1026 nt)	h16_B1674	hypothetical membrane spanning protein
	?	AM260480	= 1885547	15 (0.550)					coding (100/1026 nt)	h16_B1674	hypothetical membrane spanning protein

GGAAAGCCGCCGGCGGGGCCGGTGCCGATGATGCCGTGCCATCCAGAATCCATTGGAGGTGCAGGTCGTGACGCAAGCAGTCTCTTCTCCTTCCCCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGCGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1885381‑1885521 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccggACTTGCCGGGGCGCAGCGGCGCATCGCCGGCGCGCGCGGGCAAGGGCGCGGCGGTGCGGGATGAGGAAACCGGGGAAGGAGAAGAGACTGCTTGCGTCACGAC  <  AM260480/1885547‑1885445                                                                                                                                                                                                                                                      GGAAAGCCGCCGGCGGGGCCGGTGCCGATGATGCCGTGCCATCCAGAATCCATTGGAGGTGCAGGTCGTGACGCAAGCAGTCTCTTCTCCTTCCCCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGC                                                                                                                <  2:965123/134‑1  GAAAGCCGCCGGCGGGGCCGGTGCCGATGATGCCGTGCCATCCAGAATCCATTGGAGGTGCAGGTCGTGACGCAAGCAGTCTCTTCTCCTTCCCCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGCG                                                                                                               >  1:295380/1‑134  GAAAGCCGCCGGCGGGGCCGGTGCCGATGATGCCGTGCCATCCAGAATCCATTGGAGGTGCAGGTCGTGACGCAAGCAGTCTCTTCTCCTTCCCCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGCG                                                                                                               >  1:317793/1‑134    AAGCCGCCGGCGGGGCCGGTGCCGATGATGCCGTGCCATCCAGAATCCATTGGAGGTGCAGGTCGTGACGCAAGCAGTCTCTTCTCCTTCCCCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGC                                                                                                                <  2:876010/131‑1    AAGCCGCCGGCGGGGCCGGTGCCGATGATGCCGTGCCATCCAGAATCCATTGGAGGTGCAGGTCGTGACGCAAGCAGTCTCTTATCCTTCCCCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGC                                                                                                                >  1:876010/1‑131                                                                                               CCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGCGCGCCGGACTTGCCGGGGCGCAGCGGCGCATCGCCGGCGCGCGC                                                                    <  1:154774/84‑1                                                                                               CCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGCGCGCCGGACTTGCCGGGGCGCAGCGGCGCATCGCCGGCGCGCGC                                                                    >  2:154774/1‑84                                                                                                      CCTCATCCCGCACCGCCGCGCCCTTGCCCGCGCGCGCCGGACTTGCCGGGGCGCAGCGGCGCATCGCCGGCGCGCGCGGGCAAGGGCGCGGCGGTGCGc                                              <  2:1020244/99‑2                                                                                                      CCTCATCCCGCACCGCCGCGCCCTTGCCCGCGCGCGCCGGACTTGCCGGGGCGCAGCGGCGCATCCCCGGCGCGCGCGGGCAAGGGCGCGGCGGTGCGc                                              >  1:1020244/1‑98                                                                                                                         GCCCTTGCCCGCGCGCGCCGGACTTGCCGGGGCGCAGCGGCGCATCGCCGGCGCGCGCGGGCAAGGGCGCGGCGGTGCGGGATGAGGAAACCGGGGAAGGAGAAGAGACTGCTTGCGTCACGAC  <  1:336332/124‑1                                                                                                                         GCCCTTGCCCGCGCGCGCCGGACTTGCCGGGGCGCAGCGGCGCATCGCCGGCGCGCGCGGGCAAGGGCGCGGCGGTGCGGGATGAGGAAACCGGGGAAGGAGAAGAGACTGCTTGCGTCACGAC  >  2:336332/1‑124                                                                                                                                 CCGCGCGCGCCGGACTTGCCGGGGCGCAGCGGCGCATCGC                                                                              >  1:669329/1‑40                                                                                                                                 CCGCGCGCGCCGGACTTGCCGGGGCGCAGCGGCGCATCGC                                                                              <  2:669329/40‑1                                                                                                                                                                                                                                                      GGAAAGCCGCCGGCGGGGCCGGTGCCGATGATGCCGTGCCATCCAGAATCCATTGGAGGTGCAGGTCGTGACGCAAGCAGTCTCTTCTCCTTCCCCGGTTTCCTCATCCCGCACCGCCGCGCCCTTGCCCGCGCGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1885381‑1885521 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgccggACTTGCCGGGGCGCAGCGGCGCATCGCCGGCGCGCGCGGGCAAGGGCGCGGCGGTGCGGGATGAGGAAACCGGGGAAGGAGAAGAGACTGCTTGCGTCACGAC  <  AM260480/1885547‑1885445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.