New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 2007887	17 (0.580)	6 (0.210) +GC	4/210	2.3	20.6%	coding (105/918 nt)	h16_B1766	transcriptional regulator, LysR‑family
	?	AM260480	2007935 =	30 (1.020)					coding (57/918 nt)	h16_B1766	transcriptional regulator, LysR‑family

AGCTGCAGGCGGTAGCCGCGGCGGTCGAACAAGAGTGCATCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAGGCCAGCGCCCATACTCCAGTCA  >  AM260480/2007819‑2008064                                                                                                                     |                                                                                                                                  aGCTGCAGGCGGTAGCCGCGGCGGTCGAACAAGAGTGCATCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCg                                                                                                                  <  2:239690/134‑1 (MQ=255)     gccgggcggcttcttcggtgagcaattcgccggcgcgcgtcagctgcaggcggtagccgcggcggtcgaacaagagtgcatcaaagcgctgctccagctgccgcgcggcggcCAGGCTGCCGGCCTCCCGGATg                                                                                                              >  1:308971‑M2/113‑134 (MQ=255)     gccgggcggcttattcggtgagcaattcgccggcgcgcgtcagctgcaggcggtagccgcggcggtcgaacaagagtgcatcaaagcgctgctccagctgccgcgcggcggcCAGGCTGCCGGCCTCCCGGATg                                                                                                              >  1:971555‑M2/113‑134 (MQ=255)          cGGTAGCCGCGGCGGTCGAACAAGAGTGCATCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCt                                                                                                                              <  2:305863/113‑1 (MQ=255)          cGGTAGCCGCGGCGGTCGAACAAGAGTGCATCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCt                                                                                                                              >  1:305863/1‑113 (MQ=255)                                      cATCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTcc                                                                                                                    <  2:438024/95‑1 (MQ=255)                                      cATCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTcc                                                                                                                    >  1:438024/1‑95 (MQ=255)                                       aTCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTgggca                                                                                                                         <  1:72114/89‑5 (MQ=255)                                       aTCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTgggca                                                                                                                         >  2:72114/1‑85 (MQ=255)                                        tCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACAt                                                                           >  2:145012/1‑134 (MQ=255)                                          cgtcagctgcaggcggtagccgcggcggtcgaacaagagtgcatcaaagcgctgctccagctgccgcgcggcggcCAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACAtgt                                                                         <  2:308971‑M2/59‑1 (MQ=255)                                          cgtcagctgcaggcggtagccgcggcggtcgaacaagagtgcatcaaagcgctgctccagctgccgcgcggcggcCAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACAtgt                                                                         <  2:971555‑M2/59‑1 (MQ=255)                                                    tCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCa                                                                      <  2:293842/127‑1 (MQ=255)                                                    tCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCa                                                                      >  1:532622/1‑127 (MQ=255)                                                    tCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCa                                                                      <  2:532622/127‑1 (MQ=255)                                                    tCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCa                                                                      >  1:293842/1‑127 (MQ=255)                                                                        cGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGAtt                                            >  2:826443/1‑133 (MQ=255)                                                                        cGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGAtt                                            >  2:935901/1‑133 (MQ=255)                                                                                  gACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCcag                                                                                                      >  1:122008/1‑65 (MQ=255)                                                                                  gACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCcag                                                                                                      <  2:122008/65‑1 (MQ=255)                                                                                  gACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGtcct                                                                                     >  1:884446/1‑82 (MQ=255)                                                                                  gACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGtcct                                                                                     <  2:884446/82‑1 (MQ=255)                                                                                   catcaaagcgctgctccagctgccgcgcggcggcCAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTtcgtcg                                                <  2:999329‑M2/84‑1 (MQ=255)                                                                                   catcaaagcgctgctccagctgccgcgcggcggcCAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTtcgtcg                                                >  1:999329‑M2/35‑118 (MQ=255)                                                                                    cGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCa                                >  1:347354/1‑133 (MQ=255)                                                                                         ccTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCg                           >  2:89708/1‑133 (MQ=255)                                                                                           ttGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAg                        >  1:915836/1‑134 (MQ=255)                                                                                            tGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAgg                       >  2:854602/1‑134 (MQ=255)                                                                                            tGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAgg                       >  1:402666/1‑134 (MQ=255)                                                                                             gCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAgg                       <  1:89708/133‑1 (MQ=255)                                                                                             gCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAgg                       <  1:145012/133‑1 (MQ=255)                                                                                                  gCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAGGCCAgcg                 <  2:347354/134‑1 (MQ=255)                                                                                                            cgcgcgcgACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAgg                       >  2:736443/1‑118 (MQ=255)                                                                                                            cgcgcgcgACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAgg                       <  1:736443/118‑1 (MQ=255)                                                                                                                cgcgACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAGGCCAGCGCCCATACTCCAGt    >  1:978399/1‑133 (MQ=255)                                                                                                                 gcgACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAGGCCAGCGCCCATACTCCAGTCa  >  2:294888/1‑134 (MQ=255)                                                                                                                     |                                                                                                                                  AGCTGCAGGCGGTAGCCGCGGCGGTCGAACAAGAGTGCATCAAAGCGCTGCTCCAGCTGCCGCGCGGCGTGCGACACCGTGGACGGCGCCTTGCCCAGCCTGGCCGCCGCGCGCGACAGGCTGCCGGCCTCCCGGATGGCCTCCAGCAGGGCCAATTCGTCCTCCGACAACATGTGCAACTCCTTCGAACGTGTTCGTCGGATTGATCGTATGGCAAACCGGAGGCCAGCGCCCATACTCCAGTCA  >  AM260480/2007819‑2008064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.