| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 315882 | 20 (0.790) | 7 (0.420) +CTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGC |
7/134 | 0.8 | 34.2% | coding (1082/1998 nt) | gltS1 | signal transduction histidine kinase regulating C4‑dicarboxylate transport system |
| ? | AM260479 | 315918 = | 21 (0.830) | coding (1046/1998 nt) | gltS1 | signal transduction histidine kinase regulating C4‑dicarboxylate transport system | |||||
GGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/315824‑315882‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCG > AM260479/315918‑316004 ||||||||||||||||||||||||||||||||||| GGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCCTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGCGCCAGCGCCGCCGCC > 1:835900/1‑109GGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCCTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGCGCCAGCGCCGCCGCC < 2:835900/109‑1 GCATGTCGCGCGCGCGCTGGCGGCGCTGGCCTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGCGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCC > 1:142900/1‑116 GCATGTCGCGCGCGCGCTGGCGGCGCTGGCCTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGCGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCC < 2:142900/116‑1 GCGCGCGCGCTGGCGGCGCTGGCCTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGCGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCAC < 1:79890/102‑1 GCGCGCGCGCTGGCGGCGCTGGCCTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGCGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCAC > 2:79890/1‑102 GCGGCGCTGGCCTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGCGACAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCG < 2:974216/133‑1 ||||||||||||||||||||||||||||||||||| GGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/315824‑315882‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCG > AM260479/315918‑316004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |