| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 315882 | 20 (0.790) | 7 (0.420) +CTATGCCTGCATCTGCCTGCTGCTGGTCAACTGGC |
7/134 | 0.8 | 34.2% | coding (1082/1998 nt) | gltS1 | signal transduction histidine kinase regulating C4‑dicarboxylate transport system |
| ? | AM260479 | 315918 = | 21 (0.830) | coding (1046/1998 nt) | gltS1 | signal transduction histidine kinase regulating C4‑dicarboxylate transport system | |||||
CCTCGACGCGGCGCTCCAGCTGGTCGTAGGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCGCCGACCGTGCGGTCCAG > AM260479/315796‑316021 | ccTCGACGCGGCGCTCCAGCTGGTCGTAGGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGcgccgcc < 1:554689/134‑1 (MQ=255) gACGCGGCGCTCCAGCTGGTCGTAGGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGcgccgccgc < 2:103652/132‑1 (MQ=255) cggcgCTCCAGCTGGTCGTAGGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGt > 1:820573/1‑134 (MQ=255) aGCTGGTCGTAGGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTgcg < 2:902032/134‑1 (MQ=255) aGCTGGTCGTAGGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTgcg > 1:902032/1‑134 (MQ=255) gCTGGTCGTAGGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTgcgc < 2:173547/134‑1 (MQ=255) ggcggcctcaagcaggcggcggctgtactgcatgtcgcgcgcgcgctggcggcgctggcctatgcctgcatctgcctgctgctggtcaactggcGCCAGCgccgccgcc < 2:835900‑M2/15‑1 (MQ=255) ggcggcctcaagcaggcggcggctgtactgcatgtcgcgcgcgcgctggcggcgctggcctatgcctgcatctgcctgctgctggtcaactggcGCCAGCgccgccgcc > 1:835900‑M2/95‑109 (MQ=255) aaGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAg > 1:220905/1‑126 (MQ=255) aaGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAg < 2:220905/126‑1 (MQ=255) gCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTcc < 2:820573/134‑1 (MQ=255) cTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCAcc < 2:210602/133‑1 (MQ=255) gcatgtcgcgcgcgcgctggcggcgctggcctatgcctgcatctgcctgctgctggtcaactggcGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTcc < 2:142900‑M2/51‑1 (MQ=255) gcatgtcgcgcgcgcgctggcggcgctggcctatgcctgcatctgcctgctgctggtcaactggcGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTcc > 1:142900‑M2/66‑116 (MQ=255) tCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTgcg > 1:661057/1‑89 (MQ=255) tCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTgcg < 2:661057/89‑1 (MQ=255) gcgcgcgcgctggcggcgctggcctatgcctgcatctgcctgctgctggtcaactggcGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCAc < 1:79890‑M2/44‑1 (MQ=255) gcgcgcgcgctggcggcgctggcctatgcctgcatctgcctgctgctggtcaactggcGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCAc > 2:79890‑M2/59‑102 (MQ=255) cgcgcgcTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGt > 2:431390/1‑75 (MQ=255) cgcgcgcTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGt < 1:431390/75‑1 (MQ=255) cgcgcgcTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCAc < 1:920038/120‑1 (MQ=255) cgcgcgcTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCAc > 2:920038/1‑120 (MQ=255) gctggcggcgctggcgCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCagccagcc > 1:477484/1‑134 (MQ=255) gcggcgctggcctatgcctgcatctgcctgctgctggtcaactggcGACAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCcgcg < 2:974216‑M2/87‑1 (MQ=255) gATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCGCCGACCGTGCGGTCCAg < 1:662433/117‑1 (MQ=255) gATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCGCCGACCGTGCGGTCCAg > 2:662433/1‑117 (MQ=255) aGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCGCCGAc > 2:544028/1‑94 (MQ=255) aGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCGCCGAc < 1:544028/94‑1 (MQ=255) | CCTCGACGCGGCGCTCCAGCTGGTCGTAGGCGGCCTCAAGCAGGCGGCGGCTGTACTGCATGTCGCGCGCGCGCTGGCGGCGCTGGCGCCAGTTGACCAGCAGCAGGCAGATGCAGGCATAGGCCAGCGCCGCCGCCACGGTGGCGTTGCGCGCATTGGCCAGCACCGGCTCCAGCGGCGCCATCACCTGCATGGTCCAGCCAGCCGCGCCGACCGTGCGGTCCAG > AM260479/315796‑316021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |