New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 98272412 (0.470)4 (0.170)
+ATGTCT
3/192 2.1 28.8% coding (327/909 nt) h16_A0889 transcriptional regulator, LysR‑family
?AM260479 982748 = 9 (0.360)coding (303/909 nt) h16_A0889 transcriptional regulator, LysR‑family

CGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/982690‑982724
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGT  >  AM260479/982748‑982825
                                   ||||||                                                                              
CGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCAGCATGTCTCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCG                                        <  1:1031239/81‑1
CGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCAGCATGTCTCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCG                                        >  2:1031239/1‑81
                         ggGCGCCAGCATGTCTCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGT  <  1:882954/92‑1
                         ggGCGCCAGCATGTCTCGCCGGAGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGT  >  2:882954/3‑94
                                   ||||||                                                                              
CGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/982690‑982724
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGT  >  AM260479/982748‑982825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.