| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 982724 | 12 (0.470) | 4 (0.170) +ATGTCT |
3/192 | 2.1 | 28.8% | coding (327/909 nt) | h16_A0889 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 982748 = | 9 (0.360) | coding (303/909 nt) | h16_A0889 | transcriptional regulator, LysR‑family | |||||
CGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/982690‑982724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGT > AM260479/982748‑982825 |||||| CGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCAGCATGTCTCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCG < 1:1031239/81‑1CGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCAGCATGTCTCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCG > 2:1031239/1‑81 ggGCGCCAGCATGTCTCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGT < 1:882954/92‑1 ggGCGCCAGCATGTCTCGCCGGAGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGT > 2:882954/3‑94 |||||| CGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/982690‑982724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGT > AM260479/982748‑982825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |