New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 982724	12 (0.470)	4 (0.170) +ATGTCT	3/192	2.1	28.8%	coding (327/909 nt)	h16_A0889	transcriptional regulator, LysR‑family
	?	AM260479	982748 =	9 (0.360)					coding (303/909 nt)	h16_A0889	transcriptional regulator, LysR‑family

ACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGTGGCAAGCAACTGCTCCGCATGTGGCAGGAAGCGCTCGCCGTCGG  >  AM260479/982626‑982869                                                                                                                           |                                                                                                                          aCGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGt                                                                                                                >  2:1008531/1‑134 (MQ=255)   gTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCa                                                                                                              >  2:345021/1‑134 (MQ=255)       aTGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCAcgcg                                                                                                          >  2:351535/1‑134 (MQ=255)                tCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCACGCGCAACTGccc                                                                                                 <  1:345021/134‑1 (MQ=255)                          cGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGgcg                                                                                        <  1:351535/133‑1 (MQ=255)                                 cTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGgc                                                                                         <  1:556656/125‑1 (MQ=255)                                 cTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGgc                                                                                         >  2:556656/1‑125 (MQ=255)                                                              tatCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGcc                                                   <  2:959313/134‑1 (MQ=255)                                                                                  cggggtaggcggcaaggaattcgggcagcgccagcatgtctCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCg                                                                                    <  1:1031239‑M2/40‑1 (MQ=255)                                                                                  cggggtaggcggcaaggaattcgggcagcgccagcatgtctCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCg                                                                                    >  2:1031239‑M2/42‑81 (MQ=255)                                                                                                           gggcgccagcatgtctCGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGt                                              <  1:882954‑M2/78‑1 (MQ=255)                                                                                                           gggcgccagcatgtctCGCCGGAGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGt                                              >  2:882954‑M2/17‑94 (MQ=255)                                                                                                               gcgcCCGAAGGACGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGTGGCAAGCAACTGCTCCGCATGTGGCAGGAAGCGCTCGCCGTcgg  <  1:1008531/134‑1 (MQ=255)                                                                                                                           |                                                                                                                          ACGTCGATGCTGGCATCGACCAGTCCGATCACCTGGTCGGTCAGGCGCAGGTCAAGCGCGATATCGGGGTAGGCGGCAAGGAATTCGGGCAGCGCCGGCGAGACATGCTGGCGCCCGAAGGACGCCGGCGCGGTCACGCGCAACTGCCCGCGCGGGCGCTCGGCGCTGGTGCCGACCGATGCGCTGGCAAGAGCCGCGGTGGCAAGCAACTGCTCCGCATGTGGCAGGAAGCGCTCGCCGTCGG  >  AM260479/982626‑982869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.