New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1417204	11 (0.430)	3 (0.130)	3/186	2.1	21.4%	coding (243/963 nt)	h16_A1303	ABC‑type transporter, ATPase component: PepT family
	?	AM260479	= 1417218	12 (0.520)					coding (257/963 nt)	h16_A1303	ABC‑type transporter, ATPase component: PepT family

ATCCTCGGCATCGTCGGCGAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1417064‑1417204 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccgcgcAGCGCCTGCCACTGGCGCGGCGAACACGCCAGCAGCTCCCGTCCCTTGAAGCGCACCGAACCGCCAGTGACACGCCCGGGCGGGTCCAGCAGGTTCATCAGCGAAAACGCCGTCACCGACTTGCCCGA  <  AM260479/1417218‑1417091                                                                                                                                                                                                                                                                               ATCCTCGGCATCGTCGGCGAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTC                                                                                                                                         <  2:429652/134‑1       GGCATCGTCGGCGAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGC                                                                                                                                    <  2:69429/133‑1                GGCGAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGC                                                                                                                                    >  1:1014653/1‑124                GGCGAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGC                                                                                                                                    <  2:1014653/124‑1                   GAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGC                                                                                                                                  <  1:411244/123‑1                   GAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGC                                                                                                                                  >  2:411244/1‑123                                                                                               GTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCAGCGCCTGCCACTGGCGCGG                                                                                                              <  1:315858/67‑1                                                                                               GTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCAGCGCCTGCCACTGGCGCGG                                                                                                              >  2:315858/1‑67                                                                                                                           GCTGGCGTGTTCGCCGCGCAGCGCCTGCCACTGGCGCGGCGAACACGCCAGCAGCTCCCGTCCCTTGAAGCGCACCGAACCGCCAGTGACACGCCCGGGCGGGTCCAGCAGGTTCATCAGCGAAAACGCCGTCA               >  2:292313/1‑134                                                                                                                                        CCGCGCAGCGCCTGCCACTGGCGCGGCGAACACGCCAGCAGCTCCCGTCCCTTGAAGCGCACCGAACCGCCAGTGACACGCCCGGGCGGGTCCAGCAGGTTCATCAGCGAAAACGCCGTCACCGACTTGCCCGA  <  1:292313/134‑1                                                                                                                                                                                                                                                                               ATCCTCGGCATCGTCGGCGAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/1417064‑1417204 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccgcgcAGCGCCTGCCACTGGCGCGGCGAACACGCCAGCAGCTCCCGTCCCTTGAAGCGCACCGAACCGCCAGTGACACGCCCGGGCGGGTCCAGCAGGTTCATCAGCGAAAACGCCGTCACCGACTTGCCCGA  <  AM260479/1417218‑1417091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.