New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 1417204	11 (0.430)	3 (0.130)	3/186	2.1	21.4%	coding (243/963 nt)	h16_A1303	ABC‑type transporter, ATPase component: PepT family
	?	AM260479	= 1417218	12 (0.520)					coding (257/963 nt)	h16_A1303	ABC‑type transporter, ATPase component: PepT family

GAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGTCGCTCAACCCGGTGATGCGCGTGGGCGACCAGCTGGCCGAGACCGTGCTGGTGCATCGCCGCCGCACCCG  >  AM260479/1417082‑1417332                                                                                                                           |                                                                                                                                 gAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGC                                                                                                                                  >  2:411244‑M1/1‑123 (MQ=255) gAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGC                                                                                                                                  <  1:411244‑M1/123‑1 (MQ=255)          tCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTgcgcgg                                                                                                              <  1:292313‑M2/134‑7 (MQ=255)                       tGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTgcgcggcgaacacgccagc                                                                                                 >  2:292313‑M2/1‑115 (MQ=255)                                  tCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTcc                                                                                       <  2:35060/133‑1 (MQ=255)                                            aCCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATc                                                                                                    <  2:885793/110‑1 (MQ=255)                                            aCCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATc                                                                                                    >  1:885793/1‑110 (MQ=255)                                                                             gTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCagcgcctgccactggcgcgg                                                                                                              <  1:315858‑M1/67‑21 (MQ=255)                                                                             gTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCagcgcctgccactggcgcgg                                                                                                              >  2:315858‑M1/1‑47 (MQ=255)                                                                             gTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGTCGCTCAACCCGGTGATGCGCGTGGGCGAc                                           >  1:93282/1‑134 (MQ=255)                                                                                            aGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGt                                                                        <  1:963147/90‑1 (MQ=255)                                                                                            aGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGt                                                                        >  2:963147/1‑90 (MQ=255)                                                                                            aGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGTCGCTCAACCCGGTGATGCGCGTGGGCGACCAGc                                       >  2:242028/1‑123 (MQ=255)                                                                                            aGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGTCGCTCAACCCGGTGATGCGCGTGGGCGACCAGc                                       <  1:242028/123‑1 (MQ=255)                                                                                                         gctgGCGTGTTCGCCGCGCagcgcctgccactggcgcggcgaacacgccagcagctcccgtcccttgaagcgcaccgaaccgccagtgacacgcccgggcgggtccagcaggttcatcagcgaaaacgccgtca               >  2:292313‑M1/1‑19 (MQ=255)                                                                                                           tgGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGTCGCTCAACCCGGTGATGCGCGTGGGCGACCAGCTGGCCGAGACCGTGCTGGTGCATcgc             >  1:247241/1‑134 (MQ=255)                                                                                                              cGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGt                                                                        <  1:519219/72‑1 (MQ=255)                                                                                                              cGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGt                                                                        >  2:519219/1‑72 (MQ=255)                                                                                                                      ccgcGCagcgcctgccactggcgcggcgaacacgccagcagctcccgtcccttgaagcgcaccgaaccgccagtgacacgcccgggcgggtccagcaggttcatcagcgaaaacgccgtcaccgacttgcccga  <  1:292313‑M1/134‑129 (MQ=255)                                                                                                                      ccgcGCCAGTGGCAGGCGCTgcgcggcgaacacgccagcagctcccgtcccttgaagcgcaccgaac                                                                     >  2:315858‑M2/1‑20 (MQ=255)                                                                                                                      ccgcGCCAGTGGCAGGCGCTgcgcggcgaacacgccagcagctcccgtcccttgaagcgcaccgaac                                                                     <  1:315858‑M2/67‑48 (MQ=255)                                                                                                                           |                                                                                                                                 GAGTCAGGCTCGGGCAAGTCGGTGACGGCGTTTTCGCTGATGAACCTGCTGGACCCGCCCGGGCGTGTCACTGGCGGTTCGGTGCGCTTCAAGGGACGGGAGCTGCTGGCGTGTTCGCCGCGCCAGTGGCAGGCGCTGCGCGGCGACCGCATCGCGATGGTGTTCCAGGATCCGATGATGTCGCTCAACCCGGTGATGCGCGTGGGCGACCAGCTGGCCGAGACCGTGCTGGTGCATCGCCGCCGCACCCG  >  AM260479/1417082‑1417332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.