New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 2538231 =15 (0.590)4 (0.170) 4/192 1.8 23.4% coding (552/900 nt) h16_A2338 conserved hypothetical protein
?AM260479 2538284 = 12 (0.500)coding (499/900 nt) h16_A2338 conserved hypothetical protein

CTGGTGTTCCTGGTGCTGGTGCTGGTGACGCTGCCGCTGTGGCTGATCCCGCCGTTCTTTGCGCTGATCCCGCCGGTGCTGTGGGGCTGGCTGACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2538368‑2538231
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGTC  >  AM260479/2538284‑2538342
                                                                                                                                                                                                     
CTGGTGTTCCTGGTGCTGGTGCTGGTGACGCTGCCGCTGTGGCTGATCCCGCCGTTCTTTGCGCTGATCCCGCCGGTGCTGTGGGGCTGGCTGACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGC                                                                 >  2:109908/1‑134
                                                                                            GACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGTC  >  1:282699/1‑105
                                                                                            GACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGTC  <  2:282699/105‑1
                                                                                                             CGTATGACGCGCTCGCCGACCACGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGC        >  1:123223/1‑82
                                                                                                             CGTATGACGCGCTCGCCGACCACGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGC        <  2:123223/82‑1
                                                                                                                                                                                                     
CTGGTGTTCCTGGTGCTGGTGCTGGTGACGCTGCCGCTGTGGCTGATCCCGCCGTTCTTTGCGCTGATCCCGCCGGTGCTGTGGGGCTGGCTGACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2538368‑2538231
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGTC  >  AM260479/2538284‑2538342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.