New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	2538231 =	15 (0.590)	4 (0.170)	4/192	1.8	23.4%	coding (552/900 nt)	h16_A2338	conserved hypothetical protein
	?	AM260479	2538284 =	12 (0.500)					coding (499/900 nt)	h16_A2338	conserved hypothetical protein

CTGGTGTTCCTGGTGCTGGTGCTGGTGACGCTGCCGCTGTGGCTGATCCCGCCGTTCTTTGCGCTGATCCCGCCGGTGCTGTGGGGCTGGCTGACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2538368‑2538231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGTC  >  AM260479/2538284‑2538342                                                                                                                                                                                                       CTGGTGTTCCTGGTGCTGGTGCTGGTGACGCTGCCGCTGTGGCTGATCCCGCCGTTCTTTGCGCTGATCCCGCCGGTGCTGTGGGGCTGGCTGACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGC                                                                 >  2:109908/1‑134                                                                                             GACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGTC  >  1:282699/1‑105                                                                                             GACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGTC  <  2:282699/105‑1                                                                                                              CGTATGACGCGCTCGCCGACCACGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGC        >  1:123223/1‑82                                                                                                              CGTATGACGCGCTCGCCGACCACGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGC        <  2:123223/82‑1                                                                                                                                                                                                       CTGGTGTTCCTGGTGCTGGTGCTGGTGACGCTGCCGCTGTGGCTGATCCCGCCGTTCTTTGCGCTGATCCCGCCGGTGCTGTGGGGCTGGCTGACCTACCGCGTGATGACGTATGACGCGCTCGCCGACCACGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/2538368‑2538231 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGTC  >  AM260479/2538284‑2538342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.