| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | 2538231 = | 15 (0.590) | 4 (0.170) | 4/192 | 1.8 | 23.4% | coding (552/900 nt) | h16_A2338 | conserved hypothetical protein |
| ? | AM260479 | 2538284 = | 12 (0.500) | coding (499/900 nt) | h16_A2338 | conserved hypothetical protein | |||||
ACCGCCGCCGACGACACCCACAGCAGCGTCGGCGCCGAGCCCAGCAGCCCCACCGCCACCCCGATCACCAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTCAGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGT > AM260479/2538115‑2538341 | aCCGCCGCCGACGACACCCACAGCAGCGTCGGCGCCGAGCCCAGCAGCCCCACCGCCACCCCGATCACCAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAg < 1:858318/134‑1 (MQ=255) cGAGCCCAGCAGCCCCACCGCCACCCCGATCACCAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGtcatca > 1:124576/1‑116 (MQ=255) cGAGCCCAGCAGCCCCACCGCCACCCCGATCACCAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGtcatca < 2:124576/116‑1 (MQ=255) cACCCCGATCACCAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGtc > 1:126051/1‑91 (MQ=255) cACCCCGATCACCAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGtc < 2:126051/91‑1 (MQ=255) gacgctgccgctgtggctgatcccgccgttctttgcgctgatcccgccggtgctgtgggGCTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTc > 1:282699‑M1/60‑105 (MQ=255) gacgctgccgctgtggctgatcccgccgttctttgcgctgatcccgccggtgctgtgggGCTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTc < 2:282699‑M1/46‑1 (MQ=255) gccgctgtggctgatcccgccgttctttgcgctgatcccgccggtgctgtgggGCTGGCGTGGTCGGCGAGCGCGTCATACg > 1:123223‑M1/54‑82 (MQ=255) gccgctgtggctgatcccgccgttctttgcgctgatcccgccggtgctgtgggGCTGGCGTGGTCGGCGAGCGCGTCATACg < 2:123223‑M1/29‑1 (MQ=255) ccAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAgcg > 2:962604/1‑69 (MQ=255) ccAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAgcg < 1:962604/69‑1 (MQ=255) cgTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCgg < 1:406409/53‑1 (MQ=255) cgTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCgg > 2:406409/1‑53 (MQ=255) gTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTCAGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCca > 1:548305/1‑132 (MQ=255) aCCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTCAGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGt > 1:109908/1‑134 (MQ=255) gcgcTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTCAGCCAGCCCCACAGCACCGGCggg < 1:799586/82‑1 (MQ=255) gcgcTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTCAGCCAGCCCCACAGCACCGGCggg > 2:799586/1‑82 (MQ=255) gcgcTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTCAGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGAt < 1:956527/95‑1 (MQ=255) gcgcTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTCAGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGAt > 2:956527/1‑95 (MQ=255) | ACCGCCGCCGACGACACCCACAGCAGCGTCGGCGCCGAGCCCAGCAGCCCCACCGCCACCCCGATCACCAGCAGCGGCGTGCGGTGGCGGCGCACCAGCGTCTTGCGCTCTTCGGCGCTGGCGTGGTCGGCGAGCGCGTCATACGTCATCACGCGGTAGGTCAGCCAGCCCCACAGCACCGGCGGGATCAGCGCAAAGAACGGCGGGATCAGCCACAGCGGCAGCGT > AM260479/2538115‑2538341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |