| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3178510 | 14 (0.550) | 4 (0.170) | 4/186 | 1.8 | 27.8% | coding (169/591 nt) | h16_A2941 | conserved hypothetical protein |
| ? | AM260479 | = 3178559 | 8 (0.350) | coding (120/591 nt) | h16_A2941 | conserved hypothetical protein | |||||
CCGTCCATGACCTTGAAGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3178389‑3178510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggccacCGGGGCAGCACCCGAAGCGCCGCAAGTACCGGCCCCGACGCTGGAGGACGTGGCCGCGCTGCGCCCCGGCGACGAGATCGCCCGGTTCGTGGCCCGCGGCGTGGATGAGTCAGTCAAGCGCGCGGCG < AM260479/3178559‑3178433 CCGTCCATGACCTTGAAGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGC > 1:408833/1‑116CCGTCCATGACCTTGAAGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGC < 2:408833/116‑1 GATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGC < 1:65085/97‑1 GATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGC > 2:65085/1‑97 CCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGC > 1:316161/1‑37 CCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGC < 2:316161/37‑1 GATCTCGTCGCCGGGGCGCAGCGCGGCCACCGGGGCAGCACCCGAAGCGCCGCAAGTACCGGCCCCGAC > 1:311181/1‑69 GATCTCGTCGCCGGGGCGCAGCGCGGCCACCGGGGCAGCACCCGAAGCGCCGCAAGTACCGGCCCCGAC < 2:311181/69‑1 GTCGCCGGGGCGCAGCGCGGCCACCGGGGCAGCACCCGAAGCGCCGCAAGTACCGGCCCCGACGCTGGAGGACGTGGCCGCGCTGCGCCCCGGCGACGAGATCGCCCGGTTCGTGGCCCGCGGCGTGGATGAGT > 1:602729/1‑134 GTCGCCGGGGCGCAGCGCGGCCACCGGGGCAGCACCCGAAGCGCCGCAAGTACCGGCCCCGACGCTGGAGGACGTGGCCGCGCTGCGCCCCGGCGACGAGATCGCCCGGTTCGTGGCCCGCGGCGTGGA < 2:602729/129‑1 CGCGGCCACCGGGGCAGCACCCGAAGCGCCGCACGTACCGGCCCCGACGCTGGAGGACGTGGCCGCGCTGCGCCCCGGCGACGAGATCGCCCGGTTCGTGGCCCGCGGCGTGGATGAGTCAGTCAAGCGCGCGG > 2:348802/1‑134 CGGCCACCGGGGCAGCACCCGAAGCGCCGCAAGTACCGGCCCCGACGCTGGAGGACGTGGCCGCGCTGCGCCCCGGCGACGAGATCGCCCGGTTCGTGGCCCGCGGCGTGGATGAGTCAGTCAAGCGCGCGGCG > 1:709196/1‑134 CCGTCCATGACCTTGAAGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3178389‑3178510‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggccacCGGGGCAGCACCCGAAGCGCCGCAAGTACCGGCCCCGACGCTGGAGGACGTGGCCGCGCTGCGCCCCGGCGACGAGATCGCCCGGTTCGTGGCCCGCGGCGTGGATGAGTCAGTCAAGCGCGCGGCG < AM260479/3178559‑3178433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |