New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3178510	14 (0.550)	4 (0.170)	4/186	1.8	27.8%	coding (169/591 nt)	h16_A2941	conserved hypothetical protein
	?	AM260479	= 3178559	8 (0.350)					coding (120/591 nt)	h16_A2941	conserved hypothetical protein

CCGTCCATGACCTTGAAGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGGTGGCCGCGGGGACGGCTTCGGCATGCGCCGGTGGTGCCGGTTCTGCCGGCACGGGCACGCCCTCCCGCACCGCGGCC  >  AM260479/3178389‑3178637                                                                                                                          |                                                                                                                                ccGTCCATGACCTTGAAGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGt                                                                                                                     >  1:348802/1‑134 (MQ=255) ccGTCCATGACCTTGAAGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGt                                                                                                                     >  2:895276/1‑134 (MQ=255)                aaGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTg                                                                                                      <  1:895276/134‑1 (MQ=255)                  gTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTgcg                                                                                                    >  2:709196/1‑134 (MQ=255)                  gTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTgcg                                                                                                    >  1:753591/1‑134 (MQ=255)                     cGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTgcggc                                                                                                  <  1:827123/133‑1 (MQ=255)                                     gTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGcccc                                                                                 <  2:810378/134‑1 (MQ=255)                                             cgccgcGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGgtggccg                                                                         >  1:709196‑M2/1‑127 (MQ=255)                                               ccgcGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACGTGCGGCGCTTCGGGTGCTGCCCCGgtggccgcg                                                                       >  2:348802‑M2/1‑125 (MQ=255)                                                         gactgactCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGGTGGCCGCGGGGACGGCt                                                              <  1:506869/133‑1 (MQ=255)                                                              actCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGgtggccgcgctgcgccccggcgac                                                        >  1:602729‑M2/1‑110 (MQ=255)                                                                   tCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGgtggccgcgctgcgccccggcgac                                                        <  2:602729‑M2/129‑25 (MQ=255)                                                                                ccACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCgg                                                                                                                  <  1:685267/58‑1 (MQ=255)                                                                                ccACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCgg                                                                                                                  >  2:685267/1‑58 (MQ=255)                                                                                             gATCTCGTCGCCGGGGCGCAGCGCGGCCACcggggcagcacccgaagcgccgcaagtaccggccccgac                                                                                          >  1:311181‑M1/1‑30 (MQ=255)                                                                                             gATCTCGTCGCCGGGGCGCAGCGCGGCCACcggggcagcacccgaagcgccgcaagtaccggccccgac                                                                                          <  2:311181‑M1/69‑40 (MQ=255)                                                                                                   gtcgCCGGGGCGCAGCGCGGCCACcggggcagcacccgaagcgccgcaagtaccggccccgacgctggaggacgtggccgcgctgcgccccggcgacgagatcgcccggttcgtggcccgcggcgtggatgagt                   >  1:602729‑M1/1‑24 (MQ=255)                                                                                                   gtcgCCGGGGCGCAGCGCGGCCACcggggcagcacccgaagcgccgcaagtaccggccccgacgctggaggacgtggccgcgctgcgccccggcgacgagatcgcccggttcgtggcccgcggcgtgga                        <  2:602729‑M1/129‑106 (MQ=255)                                                                                                    tcgCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGGTGGCCGCGGGGACGGCTTCGGCATGCGCCGGTGGTGCCGGTTCTGCCGGCACGGGCACGcc                  <  2:753591/134‑1 (MQ=255)                                                                                                                  cgcgGCCACcggggcagcacccgaagcgccgcacgtaccggccccgacgctggaggacgtggccgcgctgcgccccggcgacgagatcgcccggttcgtggcccgcggcgtggatgagtcagtcaagcgcgcgg    >  2:348802‑M1/1‑9 (MQ=255)                                                                                                                  cgcgGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGGTGGCCGCGGGGACGGCTTCGGCATGCGCCGGTGGTGCCGGTTCTGCCGGCACGGGCACGCCCTCCCGCACCGCgg    <  1:717353/134‑1 (MQ=255)                                                                                                                    cgGCCACcggggcagcacccgaagcgccgcaagtaccggccccgacgctggaggacgtggccgcgctgcgccccggcgacgagatcgcccggttcgtggcccgcggcgtggatgagtcagtcaagcgcgcggcg  >  1:709196‑M1/1‑7 (MQ=255)                                                                                                                         aCGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGGTGGCCGCGGGGACGGCTTCgg                                                          <  2:918860/73‑1 (MQ=255)                                                                                                                         aCGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGGTGGCCGCGGGGACGGCTTCgg                                                          >  1:918860/1‑73 (MQ=255)                                                                                                                          |                                                                                                                                CCGTCCATGACCTTGAAGTGCGGATCGGCGAACAGCGTCTTCAGCGCCGCGCGCTTGACTGACTCATCCACGCCGCGGGCCACGAACCGGGCGATCTCGTCGCCGGGGCGCAGCGCGGCCACGTCCTCCAGCGTCGGGGCCGGTACTTGCGGCGCTTCGGGTGCTGCCCCGGTGGCCGCGGGGACGGCTTCGGCATGCGCCGGTGGTGCCGGTTCTGCCGGCACGGGCACGCCCTCCCGCACCGCGGCC  >  AM260479/3178389‑3178637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.