New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 3753484 =7 (0.280)5 (0.220) 5/186 1.6 41.0% coding (254/501 nt) h16_A3485 putative flavin reductase
?AM260479 3753521 = 8 (0.350)coding (217/501 nt) h16_A3485 putative flavin reductase

GTCGGCTTGACGGTGAACTCGTTTGCCTCGCTGTCGCTGGCGCCGCCGCTGATCCTGTGGAGCCTGGCGCTGCACTCGCCGAATGCGGGCCTGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3753620‑3753484
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccggGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGCCCCGCAGGCGCCGATGA  >  AM260479/3753521‑3753652
                                                                                                                                                                                                                                                                             
GTCGGCTTGACGGTGAACTCGTTTGCCTCGCTGTCGCTGGCGCCGCCGCTGATCCTGTGGAGCCTGGCGCTGCACTCGCCGAATGCGGGCCTGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTGCGCGC                                                                                                                                         >  1:821502/1‑134
     CTTGACGGTGAACTCGTTTGCCTCGCTGTCGCTGGCGCCGCCGCTGATCCTGTGGAGCCTGGCGCTGCACTCGCCGAATGCGGGCCTGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCGGG                                                                                                                                     >  2:797001/1‑133
        GACGGTGAACTCGTTTGCCTCGCTGTCGCTGGCGCCGCCGCTGATCCTGTGGAGCCTGGCGCTGCACTCGCCGAATGCGGGCCTGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCGGGCA                                                                                                                                   <  1:797849/132‑1
                                   GCTGGCGCCGCCGCTGATCCTGTGGAGCCTGGCGCTGCACTCGCCGAATGCGGGCCTGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGC                                                                                                      <  1:797001/134‑1
                                               GCTGATCCTGTGGAGCCTGGCGCTGCACTCGCCGAATGCGGGCCTGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCG                                                                                                                                       <  1:206708/89‑1
                                               GCTGATCCTGTGGAGCCTGGCGCTGCACTCGCCGAATGCGGGCCTGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCG                                                                                                                                       >  2:206708/1‑89
                                                                                           TGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTG                                                                                                                                              >  1:213049/1‑38
                                                                                           TGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTG                                                                                                                                              <  2:213049/38‑1
                                                                                                       GCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGC                                                                                                    <  1:927108/68‑1
                                                                                                       GCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGC                                                                                                    >  2:927108/1‑68
                                                                                                                                      CGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGC                   <  1:439314/118‑1
                                                                                                                                      CGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGC                   >  2:439314/1‑118
                                                                                                                                       GGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGCCCCGCAGGCGCCGATGA  >  1:451308/1‑134
                                                                                                                                                                                                                                                                             
GTCGGCTTGACGGTGAACTCGTTTGCCTCGCTGTCGCTGGCGCCGCCGCTGATCCTGTGGAGCCTGGCGCTGCACTCGCCGAATGCGGGCCTGTTCGTGCCCGGCGCGCCTTTCGGCGTCAGCATCCTGCGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3753620‑3753484
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgccggGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGCCCCGCAGGCGCCGATGA  >  AM260479/3753521‑3753652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.