New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3753484 =	7 (0.280)	5 (0.220)	5/186	1.6	41.0%	coding (254/501 nt)	h16_A3485	putative flavin reductase
	?	AM260479	3753521 =	8 (0.350)					coding (217/501 nt)	h16_A3485	putative flavin reductase

CCAGGTAGGGCACGCCGCGCTCGCAGCGCCCGTGGGCGACGCCCGCGAACTTGTCCGCCACCGGCGTGGCGAAGCGGCGCGCCAGTTCGCCATGGCCGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGCCCCGCAGGCGCCGATGA  >  AM260479/3753389‑3753652                                                                                                                                     |                                                                                                                                    cttgacggtgaactcgtttgcctcgctgtcgctggcgccgccgctgatcctgtggagcctggcgctgcactcgccgaatgcgggcctgttcgtgcccggcgcgcctttcggcgtcagcatcctgcgcgccggg                                                                                                                                     >  2:797001‑M2/133‑133 (MQ=255)    gacggtgaactcgtttgcctcgctgtcgctggcgccgccgctgatcctgtggagcctggcgctgcactcgccgaatgcgggcctgttcgtgcccggcgcgcctttcggcgtcagcatcctgcgcgccggGCa                                                                                                                                   <  1:797849‑M2/3‑1 (MQ=255)                 gcgcTCGCAGCGCCCGTGGGCGACGCCCGCGAACTTGTCCGCCACCGGCGTGGCGAAGCGGCGCGCCAGTTCGCCATGGCCGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCAt                                                                                                                    >  2:849532/1‑134 (MQ=255)                             cccGTGGGCGACGCCCGCGAACTTGTCCGCCACCGGCGTGGCGAAGCGGCGCGCCAGTTCGCCATGGCCGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCa                                                                                                        <  2:255705/134‑1 (MQ=255)                               gctggcgccgccgctgatcctgtggagcctggcgctgcactcgccgaatgcgggcctgttcgtgcccggcgcgcctttcggcgtcagcatcctgcgcgccggGCACGAACAGGCCCGCATTCGGCGAGTGCAgc                                                                                                      <  1:797001‑M2/32‑1 (MQ=255)                                                                gctgcactcgccgaatgcgggcctgttcgtgcCCGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCcagc                                                                     <  1:797001‑M1/102‑1 (MQ=255)                                                                         aGCGGCGCGCCAGTTCGCCATGGCCGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAg                                                            >  2:821502/1‑134 (MQ=255)                                                                                             tgcCCGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTc                                          <  1:797849‑M1/129‑1 (MQ=255)                                                                                               cCCGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAg                                       >  2:797001‑M1/2‑133 (MQ=255)                                                                                                 CGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAgc                                                                                 >  2:206708‑M1/1‑89 (MQ=255)                                                                                                 CGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAgc                                                                                 <  1:206708‑M1/89‑1 (MQ=255)                                                                                                   gcgcgcctttcggcgtcagcatcctgcgcgccggGCACGAACAGGCCCGCATTCGGCGAGTGCAgcgc                                                                                                    <  1:927108‑M2/34‑1 (MQ=255)                                                                                                   gcgcgcctttcggcgtcagcatcctgcgcgccggGCACGAACAGGCCCGCATTCGGCGAGTGCAgcgc                                                                                                    >  2:927108‑M2/35‑68 (MQ=255)                                                                                                   GCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGAc                                  >  1:821502‑M1/1‑134 (MQ=255)                                                                                                        CAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACa                                                                                                                             <  2:213049‑M1/38‑1 (MQ=255)                                                                                                        CAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACa                                                                                                                             >  1:213049‑M1/1‑38 (MQ=255)                                                                                                                    gCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAg                                       <  2:577681/112‑1 (MQ=255)                                                                                                                    gCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAg                                       >  1:577681/1‑112 (MQ=255)                                                                                                                    gCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGggccgg                           <  1:592174/124‑1 (MQ=255)                                                                                                                    gCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGggccgg                           >  2:592174/1‑124 (MQ=255)                                                                                                                         aaGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGCCCCGCAg            >  1:345231/1‑134 (MQ=255)                                                                                                                                  cggGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTgcgc                   >  2:439314‑M2/4‑118 (MQ=255)                                                                                                                                  cggGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTgcgc                   <  1:439314‑M2/115‑1 (MQ=255)                                                                                                                                   ggGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGCCCCGCAGGCGCCGATGa  >  1:451308‑M2/3‑134 (MQ=255)                                                                                                                                     |                                                                                                                                    CCAGGTAGGGCACGCCGCGCTCGCAGCGCCCGTGGGCGACGCCCGCGAACTTGTCCGCCACCGGCGTGGCGAAGCGGCGCGCCAGTTCGCCATGGCCGGCGCGCAGGATGCTGACGCCGAAAGGCGCGCCGGGCACGAACAGGCCCGCATTCGGCGAGTGCAGCGCCAGGCTCCACAGGATCAGCGGCGGCGCCAGCGACAGCGAGGCAAACGAGTTCACCGTCAAGCCGACGGGCCGGCCCTGCGCCCCGCAGGCGCCGATGA  >  AM260479/3753389‑3753652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.