| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 3787147 | 30 (1.190) | 8 (0.360) | 6/180 | 1.3 | 22.7% | coding (821/1674 nt) | h16_A3514 | Long‑chain‑fatty‑acid‑CoA ligase |
| ? | AM260479 | = 3787178 | 28 (1.250) | coding (852/1674 nt) | h16_A3514 | Long‑chain‑fatty‑acid‑CoA ligase | |||||
AACGTGGTCAATAACGGCCGCTTTGTCGCCATAGCGATGCGACTTGGCGACAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3787005‑3787147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgcatggtCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGATAGAGCGGCACCGGGATGCACAGTACGTCACTGTCGCCAA < AM260479/3787178‑3787048 AACGTGGTCAATAACGGCCGCTTTGTCGCCATAGCGATGCGACTTGGCGACAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGC > 1:145357/1‑134 GTCAATAACGGCCGCTTTGTCGCCATAGCGATGCGACTTGGCGACAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCA < 2:145357/133‑1 GGCGACAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCAT > 2:768113/1‑134 CAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGG < 1:768113/134‑1 TCGGTCGGCGCCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGAT > 1:1001134/1‑112 TCGGTCGGCGCCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGAT < 2:1001134/112‑1 GCGCCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGATAGAGCGGCACCGGGA > 1:783795/1‑120 GCGCCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGATAGAGCGGCACCGGGA < 2:783795/120‑1 GCGCCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGAT > 1:587512/1‑105 GCGCCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGAT < 2:587512/105‑1 CCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGAT > 1:952179/1‑102 CCTGCATGGTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGAT < 2:952179/102‑1 GTCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGATAGAGCGGCACCGGGATGCACAGTACGTCACTGTCGCCAA < 2:526515/133‑1 AACGTGGTCAATAACGGCCGCTTTGTCGCCATAGCGATGCGACTTGGCGACAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AM260479/3787005‑3787147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctgcatggtCGCGAGCGGATCGAAGGCCTCGCCCGGGAACACCATGCAGGCGCCGACCGAGACGCAGGCCAGCACCGACAGCACCATGCCGAAGCAGTGATAGAGCGGCACCGGGATGCACAGTACGTCACTGTCGCCAA < AM260479/3787178‑3787048 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |