New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3787147	30 (1.190)	8 (0.360)	6/180	1.3	22.7%	coding (821/1674 nt)	h16_A3514	Long‑chain‑fatty‑acid‑CoA ligase
	?	AM260479	= 3787178	28 (1.250)					coding (852/1674 nt)	h16_A3514	Long‑chain‑fatty‑acid‑CoA ligase

TTGGCGACAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTATCGCCCAGCTGGACCATCCGGAGTTCAGCCGCTTCGACTTCTCGGCCCTGCGCACCGGCATCATGG  >  AM260479/3787048‑3787305                                                                                                                                   |                                                                                                                                ttGGCGACAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGac                                                                                                                               <  2:526515‑M2/133‑3 (MQ=255)                         tCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcaggcgc                                                                                                                    <  2:783795‑M2/120‑14 (MQ=255)                         tCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcaggcgc                                                                                                                    >  1:783795‑M2/1‑107 (MQ=255)                         tCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      >  1:317091/1‑134 (MQ=255)                              gTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCAc                                                                                                 >  2:641694/1‑134 (MQ=255)                                       tATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTg                                                                                          <  1:526515/132‑1 (MQ=255)                                        aTCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcaggcgccgaccga                                                                                                             <  2:1001134‑M2/112‑21 (MQ=255)                                        aTCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcaggcgccgaccga                                                                                                             >  1:1001134‑M2/1‑92 (MQ=255)                                        aTCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcaggcgc                                                                                                                    <  2:587512‑M2/105‑14 (MQ=255)                                        aTCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcaggcgc                                                                                                                    >  1:587512‑M2/1‑92 (MQ=255)                                        aTCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcagg                                                                                                                       >  1:952179‑M2/1‑92 (MQ=255)                                        aTCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcagg                                                                                                                       <  2:952179‑M2/102‑11 (MQ=255)                                        aTCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCAt                                                                                       >  2:117978/1‑134 (MQ=255)                                                          tGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGttt                                                                     <  1:160120/134‑1 (MQ=255)                                                          tGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGttt                                                                     <  1:641694/134‑1 (MQ=255)                                                          tGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGttt                                                                     <  2:243220/134‑1 (MQ=255)                                                            cTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTAt                                                                   <  2:317091/134‑1 (MQ=255)                                                                        gCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      >  2:23966/1‑87 (MQ=255)                                                                        gCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      <  1:1012599/87‑1 (MQ=255)                                                                        gCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      <  1:23966/87‑1 (MQ=255)                                                                        gCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      >  2:1012599/1‑87 (MQ=255)                                                                        gCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTATCGCCCAGCTGGa                                                       >  1:447397/1‑134 (MQ=255)                                                                            gCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      <  2:488306/83‑1 (MQ=255)                                                                            gCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      >  1:488306/1‑83 (MQ=255)                                                                            gCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTg                                                                                                    >  2:128991/1‑85 (MQ=255)                                                                            gCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTg                                                                                                    <  1:128991/85‑1 (MQ=255)                                                                                 tcggtcggCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTATCGCCCAGCTGGACCATCCg                                                >  1:1062773/1‑132 (MQ=255)                                                                                     tcggCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTATCGCCCAGCTGGACCATCCGGAGTTc                                          <  1:343085/134‑1 (MQ=255)                                                                                          gcCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTATCGCCCAGCTGGACCATCCGGAGTTCAGCCg                                     <  2:447397/134‑1 (MQ=255)                                                                                           ccTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcaggcgccgaccgagacgcaggccagcaccgacagcaccatgccgaagcagtgatagagcggcaccgggatgcacagtacgtcactg                                    <  1:768113‑M2/134‑94 (MQ=255)                                                                                             tGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCAc                                                                                                 >  1:595744/1‑71 (MQ=255)                                                                                             tGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCAc                                                                                                 <  2:595744/71‑1 (MQ=255)                                                                                                aTGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGaccatgcaggcgccgaccgagacgcaggccagcaccgacagcaccatgccgaagcagtgatagagcggcaccgggatgcacagtacgtcactgtcgcc                               >  2:768113‑M2/1‑36 (MQ=255)                                                                                                          cGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTATCGCCCAGCTGGACCATCCGGAGTTCAGCCGCTTCGACTTCTCGGcc                     >  1:589474/1‑134 (MQ=255)                                                                                                                  gCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      >  1:50067/1‑45 (MQ=255)                                                                                                                  gCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      <  2:332958/45‑1 (MQ=255)                                                                                                                  gCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      >  1:332958/1‑45 (MQ=255)                                                                                                                  gCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGc                                                                                                      <  2:50067/45‑1 (MQ=255)                                                                                                                             gCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTATCGCCCAGCTGGACCATCCGGAGTTCAGCCGCTTCGACTTCTCGGCCCTGCGCACCGGCATCATgg  <  1:970671/134‑1 (MQ=255)                                                                                                                                   |                                                                                                                                TTGGCGACAGTGACGTACTGTGCATCCCGGTGCCGCTCTATCACTGCTTCGGCATGGTGCTGTCGGTGCTGGCCTGCGTCTCGGTCGGCGCCTGCATGGTGTTCCCGGGCGAGGCCTTCGATCCGCTCGCGACCATGCAGGCGGCCAGCGAGGAACGCTGCACCGCCCTGCATGGCGTGCCGACCATGTTTATCGCCCAGCTGGACCATCCGGAGTTCAGCCGCTTCGACTTCTCGGCCCTGCGCACCGGCATCATGG  >  AM260479/3787048‑3787305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.