New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1197838	9 (0.410)	4 (0.200)	4/186	1.6	30.5%	coding (970/1437 nt)	h16_B1061	Nucleotidyltransferase/DNA polymerase involved in DNA repair
	?	AM260480	= 1197865	10 (0.500)					coding (997/1437 nt)	h16_B1061	Nucleotidyltransferase/DNA polymerase involved in DNA repair

GTGCCGGTGGGCCTGGCCCAGCCCAGCCGCGACCCCGCGCACCTGTCGCGGCTGCTGCGCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATGCGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1197697‑1197838 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgccgcCGGGCTCGGGGAACAGCGCATCGCTGTGC  <  AM260480/1197865‑1197837                                                                                                                                                                             GTGCCGGTGGGCCTGGCCCAGCCCAGCCGCGACCCAGCGCACCTGTCGCGGCTGCTGCGCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATG                                       <  1:258661/134‑1                                         ACCTGTCGCGGCTGCTGCGCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATGCGTGCCGC                               <  1:363021/102‑1                                         ACCTGTCGCGGCTGCTGCGCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATGCGTGCCGC                               >  2:363021/1‑102                                         ACCTGTCGCGGCTGCTGCGCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATGCGT                                    <  1:756009/97‑1                                         ACCTGTCGCGGCTGCTGCGCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATGCGT                                    >  2:756009/1‑97                                                           GCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGATGCGATGGCCGCATGCGTGCCGCCGGGCTCGGGGAACAG               <  1:274705/100‑1                                                           GCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGATGCGATGGCCGCATGCGTGCCGCCGGGCTCGGGGAACAG               >  2:274705/1‑100                                                            CGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATGCGTGC                                  <  1:490676/80‑1                                                            CGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATGCGTGC                                  >  2:490676/1‑80                                                                                                                    TTGAGGCGATGGCCGCATGCGTGCCGCCGGGCTCGGGGAACAGCGCATCGCTGTGC  <  1:438851/56‑1                                                                                                                    TTGAGGCGATGGCCGCATGCGTGCCGCCGGGCTCGGGGAACAGCGCATCGCTGTGC  >  2:438851/1‑56                                                                                                                                                                             GTGCCGGTGGGCCTGGCCCAGCCCAGCCGCGACCCCGCGCACCTGTCGCGGCTGCTGCGCGAGAAGCTCGACAAGCTCAATTTCCACGCCCCGGTGACCGGCCTGGCGCTGCGCGTTGAGGCGATGGCCGCATGCGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1197697‑1197838 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgccgcCGGGCTCGGGGAACAGCGCATCGCTGTGC  <  AM260480/1197865‑1197837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.