New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 = 144718512 (0.550)4 (0.180) 4/202 1.7 25.1% coding (113/726 nt) h16_B1290 conserved hypothetical protein
?AM260480 1447230 = 12 (0.550)coding (158/726 nt) h16_B1290 conserved hypothetical protein

CCGTTACGCCATCTACCTGGCGCCCTCAGATCCGTTCCGCACGTTTGGCAGCCAGTGGCTCGGCCGCGACGCCGATACCGGCGCCGCGCTGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1447090‑1447185
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGCCGTTCCGGCT  >  AM260480/1447230‑1447275
                                                                                                                                              
CCGTTACGCCATCTACCTGGCGCCCTCAGATCCGTTCCGCACGTTTGGCAGCCAGTGGCTCGGCCGCGACGCCGATACCGGCGCCGCCATGCCCGCCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGC            <  1:625557/132‑1
CCGTTACGCCATCTACCTGGCGCCCTCAGATCCGTTCCGCACGTTTGGCAGCCAGTGGCTCGGCCGCGACGCCGATACCGGCGCCGCCATGCCCGCCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGC            >  2:625557/1‑132
                                                CAGCCAGTGGCTCGGCCGCGACGCCGATACCGCCGCCGCCATGCCCGCCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGCCGTTCCGGCT  >  1:999835/1‑94
                                                CAGCCAGTGGCTCGGCCGCGACGCCGATACCGCCGCCGCCATGCCCGCCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGCCGTTCCGGCT  <  2:999835/94‑1
                                                          CTCGGCCGCGACGCCGATACCGGCGCCGCGCTGCCCGC                                                <  1:494962/38‑1
                                                          CTCGGCCGCGACGCCGATACCGGCGCCGCGCTGCCCGC                                                >  2:494962/1‑38
                                                                                                                                              
CCGTTACGCCATCTACCTGGCGCCCTCAGATCCGTTCCGCACGTTTGGCAGCCAGTGGCTCGGCCGCGACGCCGATACCGGCGCCGCGCTGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1447090‑1447185
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGCCGTTCCGGCT  >  AM260480/1447230‑1447275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.