New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1447185	12 (0.550)	4 (0.180)	4/202	1.7	25.1%	coding (113/726 nt)	h16_B1290	conserved hypothetical protein
	?	AM260480	1447230 =	12 (0.550)					coding (158/726 nt)	h16_B1290	conserved hypothetical protein

CCGTTACGCCATCTACCTGGCGCCCTCAGATCCGTTCCGCACGTTTGGCAGCCAGTGGCTCGGCCGCGACGCCGATACCGGCGCCGCGCTGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1447090‑1447185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGCCGTTCCGGCT  >  AM260480/1447230‑1447275                                                                                                                                                CCGTTACGCCATCTACCTGGCGCCCTCAGATCCGTTCCGCACGTTTGGCAGCCAGTGGCTCGGCCGCGACGCCGATACCGGCGCCGCCATGCCCGCCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGC            <  1:625557/132‑1 CCGTTACGCCATCTACCTGGCGCCCTCAGATCCGTTCCGCACGTTTGGCAGCCAGTGGCTCGGCCGCGACGCCGATACCGGCGCCGCCATGCCCGCCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGC            >  2:625557/1‑132                                                 CAGCCAGTGGCTCGGCCGCGACGCCGATACCGCCGCCGCCATGCCCGCCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGCCGTTCCGGCT  >  1:999835/1‑94                                                 CAGCCAGTGGCTCGGCCGCGACGCCGATACCGCCGCCGCCATGCCCGCCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGCCGTTCCGGCT  <  2:999835/94‑1                                                           CTCGGCCGCGACGCCGATACCGGCGCCGCGCTGCCCGC                                                <  1:494962/38‑1                                                           CTCGGCCGCGACGCCGATACCGGCGCCGCGCTGCCCGC                                                >  2:494962/1‑38                                                                                                                                                CCGTTACGCCATCTACCTGGCGCCCTCAGATCCGTTCCGCACGTTTGGCAGCCAGTGGCTCGGCCGCGACGCCGATACCGGCGCCGCGCTGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1447090‑1447185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGGCGCGCTACGGCCTGCATGCCACGCTGAAGCCGCCGTTCCGGCT  >  AM260480/1447230‑1447275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.