New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1635550	7 (0.320)	4 (0.200)	4/190	1.6	37.2%	coding (845/1404 nt)	h16_B1459	response regulator containing sigma54 activator and Fis‑type DNA‑binding domains
	?	AM260480	= 1635552	7 (0.340)					coding (843/1404 nt)	h16_B1459	response regulator containing sigma54 activator and Fis‑type DNA‑binding domains

GTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1635459‑1635550 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcggCACCGAGCGCGAGATTGCCGTGGATGTGCGCATCGTCGCGGCCTGCAACCGCAACCTGGCCAACGAGGTCGCCGCCGGGCGCTTCCGCCA  <  AM260480/1635552‑1635463                                                                                                                                                                                        GTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGCACCGAGCGCGAGATTGCCGTGGATGTGCGCATCGT                                                        <  1:746369/128‑1 GTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGCACCGAGCGCGAGATTGCCGTGGATGTGCGCATCGT                                                        >  2:746369/1‑128                                                                                    CGCGCTCGGCACCGAGCGCGAGATTGCCGTGGATGTGCGCATCGTCGCGGCCTGAAACCGCAACCTGGCCAACGAGGTCGCCGCCGGGCGCTTCCGCCA  <  1:317506/99‑1                                                                                    CGCGCTCGGCACCGAGCGCGAGATTGCCGTGGATGTGCGCATCGTCGCGGCCTGAAACCGCAACCTGGCCAACGAGGTCGCCGCCGGGCGCTTCCGCCA  >  2:317506/1‑99                                                                                                                                                                                        GTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/1635459‑1635550 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctcggCACCGAGCGCGAGATTGCCGTGGATGTGCGCATCGTCGCGGCCTGCAACCGCAACCTGGCCAACGAGGTCGCCGCCGGGCGCTTCCGCCA  <  AM260480/1635552‑1635463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.