New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1635550	7 (0.320)	4 (0.200)	4/190	1.6	37.2%	coding (845/1404 nt)	h16_B1459	response regulator containing sigma54 activator and Fis‑type DNA‑binding domains
	?	AM260480	= 1635552	7 (0.340)					coding (843/1404 nt)	h16_B1459	response regulator containing sigma54 activator and Fis‑type DNA‑binding domains

ACATCGAGTCGGTAGAACAGGTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCGGTCCTCGATCACCCGCAACAGCTTGGCCTGCATCGGCAGCGGCAGCTCCGAGATCTCGTCCAGGAACAGCGTGCCGCCGTCGGCATAGAGAAACAGGC  >  AM260480/1635439‑1635670                                                                                                                |                                                                                                                         aCATCGAGTCGGTAGAACAGGTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCg                                                                                                    >  2:715530/1‑134 (MQ=255)               gAACAGGTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCGGTCCTCGATCAcc                                                                                       <  1:715530/133‑1 (MQ=255)                     gTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGcaccgagcgcgagattgccgtggatgtgcgcatcgt                                                                                      <  1:746369‑M1/128‑37 (MQ=255)                     gTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGcaccgagcgcgagattgccgtggatgtgcgcatcgt                                                                                      >  2:746369‑M1/1‑92 (MQ=255)                         tGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTTCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGTGccgagcgcg                                                                                                               <  1:317506‑M2/99‑10 (MQ=255)                         tGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTTCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGTGccgagcgcg                                                                                                               >  2:317506‑M2/1‑90 (MQ=255)                                                                               acgaTGCGCACATCCACGGCAATCTCGCGCTCGGTGccgagcgcgagattgccgtggatgtgcgcatcgtcgcggcctgcaaccgcaacctggccaacgaggtcgccgccgggcgcttccgccaggac                            <  1:746369‑M2/128‑93 (MQ=255)                                                                               acgaTGCGCACATCCACGGCAATCTCGCGCTCGGTGccgagcgcgagattgccgtggatgtgcgcatcgtcgcggcctgcaaccgcaacctggccaacgaggtcgccgccgggcgcttccgccaggac                            >  2:746369‑M2/1‑36 (MQ=255)                                                                                         caTCCACGGCAATCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCGGTCCTCGATCACCCGCAACAGCtt                                                                            >  1:402345/1‑70 (MQ=255)                                                                                         caTCCACGGCAATCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCGGTCCTCGATCACCCGCAACAGCtt                                                                            <  2:402345/70‑1 (MQ=255)                                                                                              aCGGCAATCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCGGTCCTCg                                                                                             <  1:421215/48‑1 (MQ=255)                                                                                              aCGGCAATCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCGGTCCTCg                                                                                             >  2:421215/1‑48 (MQ=255)                                                                                                   aaTCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCGGTCCTCGATCACCCGCAACAGCTTGGCCTGCATCGGCAGCGGCAGCTCCGAGATCTCGTCCAGGAACAGCGTGCCGCCGTCGGCATAGAGAAACAGGc  >  1:751507/1‑134 (MQ=255)                                                                                                        cgcgCTCGGcaccgagcgcgagattgccgtggatgtgcgcatcgtcgcggcctgaaaccgcaacctggccaacgaggtcgccgccgggcgcttccgcca                                <  1:317506‑M1/99‑91 (MQ=255)                                                                                                        cgcgCTCGGcaccgagcgcgagattgccgtggatgtgcgcatcgtcgcggcctgaaaccgcaacctggccaacgaggtcgccgccgggcgcttccgcca                                >  2:317506‑M1/1‑9 (MQ=255)                                                                                                                |                                                                                                                         ACATCGAGTCGGTAGAACAGGTCCTGGCGGAAGCGCCCGGCGGCGACCTCGTTGGCCAGGTTGCGGTTGCAGGCCGCGACGATGCGCACATCCACGGCAATCTCGCGCTCGGTGCCGAGCGGCCGGATGCGCCGGTCCTCGATCACCCGCAACAGCTTGGCCTGCATCGGCAGCGGCAGCTCCGAGATCTCGTCCAGGAACAGCGTGCCGCCGTCGGCATAGAGAAACAGGC  >  AM260480/1635439‑1635670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.