New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AM260480 | 1752148 = | 6 (0.270) | 4 (0.200) | 4/188 | 1.6 | 45.6% | coding (228/2271 nt) | glgB | 1,4‑Alpha‑glucan branching enzyme |
? | AM260480 | 1752165 = | 4 (0.200) | coding (245/2271 nt) | glgB | 1,4‑Alpha‑glucan branching enzyme |
GGTCGGCGCCGCACTGCCCGCTGCCGTCGGACCATTGCACGCGCAGCCGGTAATCGGGCGCACCGCCCTTGTATTCGCGCGGCAGCCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/1752239‑1752148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcgAATACAAGGGCGGTGCGCCCGATTACC > AM260480/1752165‑1752191 GGTCGGCGCCGCACTGCCCGCTGCCGTCGGACCATTGCACGCGCAGCCGGTAATCGGGCGCACCGCCCTTGTATTCGCGCGGCAGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACC < 1:559791/119‑1 GGTCGGCGCCGCACTGCCCGCTGCCGTCGGACCATTGCACGCGCAGCCGGTAATCGGGCGCACCGCCCTTGTATTCGCGCGGCAGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACC > 2:559791/1‑119 GCCGCACTGCCCGCTGCCGTCGGACCATTGCACGCGCAGCCGGTAATCGGGCGCACCGCCCTTGTATTCGCGCGGCAGCCGCGCGAATA < 1:153517/89‑1 GCCGCACTGCCCGCTGCCGTCGGACCATTGCACGCGCAGCCGGTAATCGGGCGCACCGCCCTTGTATTCGCGCGGCAGCCGCGCGAATA > 2:153517/1‑89 GGTCGGCGCCGCACTGCCCGCTGCCGTCGGACCATTGCACGCGCAGCCGGTAATCGGGCGCACCGCCCTTGTATTCGCGCGGCAGCCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AM260480/1752239‑1752148 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcgAATACAAGGGCGGTGCGCCCGATTACC > AM260480/1752165‑1752191 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |