| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 1752148 = | 6 (0.270) | 4 (0.200) | 4/188 | 1.6 | 45.6% | coding (228/2271 nt) | glgB | 1,4‑Alpha‑glucan branching enzyme |
| ? | AM260480 | 1752165 = | 4 (0.200) | coding (245/2271 nt) | glgB | 1,4‑Alpha‑glucan branching enzyme | |||||
GGCACGCTGGTGCGCGCCTGCCTGCCAGGGGCGGCGTCGGTGCAGCTGACCGATGCGGGCGGCACGCCACTGGCGGAGATGGCACGGCTGCATGGCGGCGGCGTCTTCGCCGCGCGGCTGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACCGGCTGCGCGTGCAATGGTCCGACGGCAGCGGGCAGTGCGGCGCCGACCCTTACGCCTTTGGCCTGCTGCTGGGTGAGCTG > AM260480/1752038‑1752271 | ggcACGCTGGTGCGCGCCTGCCTGCCAGGGGCGGCGTCGGTGCAGCTGACCGATGCGGGCGGCACGCCACTGGCGGAGATGGCACGGCTGCATGGCGGCGGCGTCTTCGCCGCGCGGCTGCCGCGCGAATAc > 2:1052056/1‑132 (MQ=255) ggcggcACGCCACTGGCGGAGATGGCACGGCTGCATGGCGGCGGCGTCTTCGCCGCGCGGCTGCCGCGCGAATACAAGGGCGGTg > 1:500187/1‑85 (MQ=255) ggcggcACGCCACTGGCGGAGATGGCACGGCTGCATGGCGGCGGCGTCTTCGCCGCGCGGCTGCCGCGCGAATACAAGGGCGGTg < 2:500187/85‑1 (MQ=255) ggAGATGGCACGGCTGCATGGCGGCGGCGTCTTCGCCGCGCGGCTGcc > 1:917644/1‑48 (MQ=255) ggAGATGGCACGGCTGCATGGCGGCGGCGTCTTCGCCGCGCGGCTGcc < 2:917644/48‑1 (MQ=255) ggtaatcgggcgcaccgcccttgtattCGCGCGGCTGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACCGGCTGCGCGTGCAATGGTCCGACGGCAGCGGGCAGTGCGGCGCCGAcc < 1:559791‑M1/92‑1 (MQ=255) ggtaatcgggcgcaccgcccttgtattCGCGCGGCTGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACCGGCTGCGCGTGCAATGGTCCGACGGCAGCGGGCAGTGCGGCGCCGAcc > 2:559791‑M1/28‑119 (MQ=255) gcgTCTTCGCCGCGCGGCTGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACCGGCTGCGCGTGCAATGGTCCGACGGCAGCGGGCAGTGCGGCGCCGACCCTTACGCCTTTGGCCTGCTGCTGGGTGAGCTg < 1:1052056/134‑1 (MQ=255) tattCGCGCGGCTGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACCGGCTGCGCGTGCAATGGTCCGACGGCAGCGGGCAGTgcggc < 1:153517‑M1/85‑1 (MQ=255) tattCGCGCGGCTGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACCGGCTGCGCGTGCAATGGTCCGACGGCAGCGGGCAGTgcggc > 2:153517‑M1/5‑89 (MQ=255) | GGCACGCTGGTGCGCGCCTGCCTGCCAGGGGCGGCGTCGGTGCAGCTGACCGATGCGGGCGGCACGCCACTGGCGGAGATGGCACGGCTGCATGGCGGCGGCGTCTTCGCCGCGCGGCTGCCGCGCGAATACAAGGGCGGTGCGCCCGATTACCGGCTGCGCGTGCAATGGTCCGACGGCAGCGGGCAGTGCGGCGCCGACCCTTACGCCTTTGGCCTGCTGCTGGGTGAGCTG > AM260480/1752038‑1752271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |