New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 2311316	0 (0.000)	28 (1.230)	24/200	0.1	100%	coding (452/462 nt)	h16_B2054	putative transporter
	?	AY305378	436316 =	NA (NA)					noncoding (1/2 nt)	direct	target site duplication

GCACGCCGATCAGGGTACCCAGCACGCAGCCCAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGAta‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/2311188‑2311316 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGATGCGACGCAAAGCGCCGAGCGCCAGTTTCTTCATGTCGTTCTT  >  AY305378/436316‑436449                                                                                                                                                                                                                                                                         GCACGCCGATCAGGGTACCCAGCACGCAGCCCAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACT                                                                                                                                    >  1:166921/1‑133  CACGCCGATCAGGGTACCCAGCACGCAGCCCAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAA                                                                                                                                  >  1:63324/1‑134                                CAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCAC                                                                                                             >  2:519653/1‑125                                CAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCAC                                                                                                             <  1:519653/125‑1                                          TAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATT                                                                                          <  2:63324/134‑1                                            GGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTG                                                                                                                          <  1:323571/100‑1                                            GGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTG                                                                                                                          >  2:323571/1‑100                                                           CGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATAC                                                                                                                                     <  2:525944/74‑1                                                           CGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATAC                                                                                                                                     >  1:525944/1‑74                                                            GACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAAC                                                                         >  1:516722/1‑133                                                                 GGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAAT                                                                                                                  >  1:211148/1‑87                                                                 GGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAAT                                                                                                                  <  2:211148/87‑1                                                                   CCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAA                                                                               >  1:343604/1‑120                                                                   CCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAA                                                                               <  2:343604/120‑1                                                                    CGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACC                                                                <  2:516722/134‑1                                                                          AAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTC                                                          >  2:246640/1‑134                                                                               CCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGC                                                                                                        >  2:505156/1‑83                                                                               CCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGC                                                                                                        <  1:505156/83‑1                                                                               CCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGT                                                                                                                     <  2:588008/70‑1                                                                               CCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGT                                                                                                                     >  1:588008/1‑70                                                                               CCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAA                                                                                                                        >  2:721824/1‑67                                                                               CCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGATACTAACCTTACTGAA                                                                                                                        <  1:721824/67‑1                                                                                                              CGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATT                                                                                          <  2:433689/66‑1                                                                                                              CGGCGCTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATT                                                                                          >  1:433689/1‑66                                                                                                                   CTCCTTAACCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGATGCGACGCAAAGCGCCGAGCGCCAGTTT                 >  2:114277/1‑134                                                                                                                           CCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGATGCGACGCAAAGCGCCGAGCGCCAGTTTCTTCATGT         >  2:316127/1‑134                                                                                                                           CCGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGATGCGACGCAAAGCGCCGAGCGCCAGTTTCTTCATGT         >  2:660410/1‑134                                                                                                                            CGGTGATACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGATGCGACGCAAAGCGCCGAGCGCCAGTTTCTTCATGTC        <  2:166921/134‑1                                                                                                                                  TACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGATGCGACGCAAAGCGCCGAGCGCCAGTTTCTTCATGTCGTTCTT  >  2:535275/1‑134                                                                                                                                  TACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGAT                                            <  1:967531/92‑1                                                                                                                                  TACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGAT                                            >  2:967531/1‑92                                                                                                                                                                                                                                                                         GCACGCCGATCAGGGTACCCAGCACGCAGCCCAGGAAGGCGTAGGCCAGGTTCTGCAGCGACAGGGCCGTGGAAAAGCCCAGCGCAAGGTGATCAAACAATTCCATGGTCGGCGCTCCTTAACCGGTGAta‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260480/2311188‑2311316 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTAACCTTACTGAAAGTAATGTCACATAGCGGCATACTTGCATTCGGGCTGGCAAAAGAACGATTTGACCAGGCTCGGCAATTTCTGGATGCGACGCAAAGCGCCGAGCGCCAGTTTCTTCATGTCGTTCTT  >  AY305378/436316‑436449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.