New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3025466	11 (0.430)	4 (0.170)	4/194	1.8	32.7%	coding (556/579 nt)	h16_A2798	conserved hypothetical protein
	?	AM260479	= 3025492	6 (0.250)					intergenic (+3/+13)	h16_A2798/h16_A2799	conserved hypothetical protein/Dinucleotide‑utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

GACGCCTACAAGCTGGGCCACTGGGAAGCCTACCGCACCCGGCGCTTCATGCCGGCGCCCGCGGATTATCCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGGCCCGGGCGGCTTCAGCCGCGCGCGATCGCGCCGATCACCGCCGACGCCGCGACAAAGCCGAACACCGCCGTCACCGCCACCGACGAGCCAAAGCCCGCGCAGGC  >  AM260479/3025343‑3025597                                                                                                                            |                                                                                                                                    gacgCCTACAAGCTGGGCCACTGGGAAGCCTACCGCACCCGGCGCTTCATGCCGGCGCCCGCGGATTATCCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTgcgcgc                                                                                                                           <  1:296047/134‑1 (MQ=255)                    aCTGGGAAGCCTACCGCACCCGGCGCTTCATGCCGGCGCCCGCGGATTATCCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGgcc                                                                                                        <  2:454711‑M2/134‑4 (MQ=255)                                                           ccGCGGATTATGCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTgcgcgc                                                                                                                           >  1:523401/1‑76 (MQ=255)                                                           ccGCGGATTATCCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTgcgcgc                                                                                                                           <  2:523401/76‑1 (MQ=255)                                                            cgcgGATTATCCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCcg                                                                                                                                   >  2:611096‑M1/1‑65 (MQ=255)                                                            cgcgGATTATCCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCcg                                                                                                                                   <  1:611096‑M1/67‑3 (MQ=255)                                                                     tCCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGGCCCGGGCGGCTTCAGCCGCGCGCGATCGCGCCGATCACCGCCGAcgccgc                                                        <  1:454711/133‑1 (MQ=255)                                                                                         aCAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGgc                                                                                                         >  1:251783‑M2/1‑62 (MQ=255)                                                                                         aCAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGgc                                                                                                         <  2:251783‑M2/64‑3 (MQ=255)                                                                                             ccTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGGCCCGGGCGGCTTCAGCCGCGCGCGATCGCGCCGATCACCGCCGACGCCGCGACAAAGCCGAACACCGCCGTCAcc                               >  2:414552/1‑134 (MQ=255)                                                                                             ccTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGGCCCGGGCGGCTTCAGCCGCGCGCGATCGCGCCGATCACCGCCGACGCCGCGACAAAGCCGAACACCGCCGTCAcc                               <  2:262542/134‑1 (MQ=255)                                                                                                   aCCCGGCGACGCCGAGATCGACGGGCcgctcaggcgct                                                                                                                         <  1:626104‑M1/38‑13 (MQ=255)                                                                                                   aCCCGGCGACGCCGAGATCGACGGGCcgctcaggcgct                                                                                                                         >  2:626104‑M1/1‑26 (MQ=255)                                                                                                    cccGGCGACGCCGAGATCGACGGGCTGCTgcgcgcgc                                                                                                                         >  2:292283/1‑37 (MQ=255)                                                                                                    cccGGCGACGCCGAGATCGACGGGCTGCTgcgcgcgc                                                                                                                         <  1:292283/37‑1 (MQ=255)                                                                                                           aCGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGgc                                                                                                         <  2:117868‑M2/46‑3 (MQ=255)                                                                                                           aCGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGgc                                                                                                         >  1:117868‑M2/1‑44 (MQ=255)                                                                                                               cGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGGCCCGGGCGGCTTCAGCCGCGCGCGATCGCGCCGATCACCGCCGACGCCGCGACAAAGCCGAACACCGCCGTCACCGCCACCGACGAGCCAAAg             <  1:414552/134‑1 (MQ=255)                                                                                                                      gACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGGCCCGGGCGGCTTCAGCCGCGCGCGATCGCGCCGATCACCGCCGACGCCGCGACAAAGCCGAACACCGCCGTCACCGCCACCGACGAGCCAAAGCCCgcgc      <  1:480003/134‑1 (MQ=255)                                                                                                                         gggCTGCTGCGCGCGCTGAGCGCCTGAGCGGCCCGGGCGGCTTCAGCCGCGCGCGATCGCGCCGATCACCGCCGACGCCGCGACAAAGCCGAACACCGCCGTCACCGCCACCGACGAGCCAAAGCCCGCGCAgg   <  1:555074/134‑1 (MQ=255)                                                                                                                          ggCcgctcaggcgctcagcgcgcgcagcagcccgtcgatctcggcgtcgccgggtgcaaggttgtcgaagaagatcagctccggataatccgcgggcgccggcatgaagcgccgggtgcggtaggcttcccagt  <  2:454711‑M1/134‑132 (MQ=255)                                                                                                                           gCcgctcaggcgctcagcgcgcgcagcagcccgtcgatctcggcgtcgccgggtgcaaggttgt                                                                       <  2:251783‑M1/64‑63 (MQ=255)                                                                                                                           gCcgctcaggcgctcagcgcgcgcagcagcccgtcgatctcggcgtcgccgggtgcaaggttgt                                                                       >  1:251783‑M1/1‑2 (MQ=255)                                                                                                                           gCcgctcaggcgctcagcgcgcgcagcagcccgtcgatctcggcgt                                                                                         <  2:117868‑M1/46‑45 (MQ=255)                                                                                                                           gCcgctcaggcgctcagcgcgcgcagcagcccgtcgatctcggcgt                                                                                         >  1:117868‑M1/1‑2 (MQ=255)                                                                                                                            |                                                                                                                                    GACGCCTACAAGCTGGGCCACTGGGAAGCCTACCGCACCCGGCGCTTCATGCCGGCGCCCGCGGATTATCCGGAGCTGATCTTCTTCGACAACCTTGCACCCGGCGACGCCGAGATCGACGGGCTGCTGCGCGCGCTGAGCGCCTGAGCGGCCCGGGCGGCTTCAGCCGCGCGCGATCGCGCCGATCACCGCCGACGCCGCGACAAAGCCGAACACCGCCGTCACCGCCACCGACGAGCCAAAGCCCGCGCAGGC  >  AM260479/3025343‑3025597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.