New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 3906712 =13 (0.510)4 (0.170) 4/190 1.8 23.5% coding (2666/3966 nt) putA bifunctional proline dehydrogenase and proline oxidase
?AM260479 3906752 = 14 (0.590)coding (2626/3966 nt) putA bifunctional proline dehydrogenase and proline oxidase

GCCACGTCTTCCTGCAGGCACAGCACGCGCAGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACA  >  AM260479/3906580‑3906819
                                                                                                                                    |                                                                                                           
agctgctgccgggccgcggcgagaccgtgggcgccgcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgcc                                                                                                            >  1:732690‑M1/133‑134 (MQ=255)
           ggccgcggcgagaccgtgggcgccgcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           >  1:922266‑M1/122‑124 (MQ=255)
           ggccgcggcgagaccgtgggcgccgcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           <  2:922266‑M1/3‑1 (MQ=255)
                       cACGCGCAGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGa                                                                                     >  1:173062/1‑134 (MQ=255)
                            gcAGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCggg                                                                                <  2:694389/134‑1 (MQ=255)
                              aGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGggcg                                                                              >  1:441773/1‑134 (MQ=255)
                                cgcCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTccg                                                                                                           >  1:655814/1‑103 (MQ=255)
                                cgcCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTccg                                                                                                           <  2:655814/103‑1 (MQ=255)
                                   gcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           >  1:680478‑M1/98‑100 (MQ=255)
                                   gcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           <  2:680478‑M1/3‑1 (MQ=255)
                                             gcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           >  1:346615‑M1/88‑90 (MQ=255)
                                             gcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           <  2:346615‑M1/3‑1 (MQ=255)
                                                                                     cgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCggg                                                                                >  2:838628‑M1/48‑77 (MQ=255)
                                                                                     cgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCggg                                                                                <  1:838628‑M1/30‑1 (MQ=255)
                                                                                            ttCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGa                  <  1:867481/132‑1 (MQ=255)
                                                                                                  cagcGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGa          <  2:588718/134‑1 (MQ=255)
                                                                                                    gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAggcgg                                                           <  1:705319/83‑1 (MQ=255)
                                                                                                    gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAggcgg                                                           >  2:705319/1‑83 (MQ=255)
                                                                                                    gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGaa         >  2:762137/1‑133 (MQ=255)
                                                                                                       ccGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGt                     >  2:999999/1‑118 (MQ=255)
                                                                                                       ccGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGt                     <  1:999999/118‑1 (MQ=255)
                                                                                                          acgaGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATcaca  <  2:173062/134‑1 (MQ=255)
                                                                                                                cgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAAc        <  2:835661‑M1/102‑1 (MQ=255)
                                                                                                                cgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAAc        >  1:835661‑M1/21‑122 (MQ=255)
                                                                                                                                    |                                                                                                           
GCCACGTCTTCCTGCAGGCACAGCACGCGCAGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACA  >  AM260479/3906580‑3906819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.