New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3906712 =	13 (0.510)	4 (0.170)	4/190	1.8	23.5%	coding (2666/3966 nt)	putA	bifunctional proline dehydrogenase and proline oxidase
	?	AM260479	3906752 =	14 (0.590)					coding (2626/3966 nt)	putA	bifunctional proline dehydrogenase and proline oxidase

GCCACGTCTTCCTGCAGGCACAGCACGCGCAGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACA  >  AM260479/3906580‑3906819                                                                                                                                     |                                                                                                            agctgctgccgggccgcggcgagaccgtgggcgccgcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgcc                                                                                                            >  1:732690‑M1/133‑134 (MQ=255)            ggccgcggcgagaccgtgggcgccgcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           >  1:922266‑M1/122‑124 (MQ=255)            ggccgcggcgagaccgtgggcgccgcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           <  2:922266‑M1/3‑1 (MQ=255)                        cACGCGCAGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGa                                                                                     >  1:173062/1‑134 (MQ=255)                             gcAGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCggg                                                                                <  2:694389/134‑1 (MQ=255)                               aGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGggcg                                                                              >  1:441773/1‑134 (MQ=255)                                 cgcCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTccg                                                                                                           >  1:655814/1‑103 (MQ=255)                                 cgcCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTccg                                                                                                           <  2:655814/103‑1 (MQ=255)                                    gcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           >  1:680478‑M1/98‑100 (MQ=255)                                    gcgctggtcggcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           <  2:680478‑M1/3‑1 (MQ=255)                                              gcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           >  1:346615‑M1/88‑90 (MQ=255)                                              gcgacgcccgcgtcaagggtgtgatgttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccg                                                                                                           <  2:346615‑M1/3‑1 (MQ=255)                                                                                      cgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCggg                                                                                >  2:838628‑M1/48‑77 (MQ=255)                                                                                      cgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCggg                                                                                <  1:838628‑M1/30‑1 (MQ=255)                                                                                             ttCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGa                  <  1:867481/132‑1 (MQ=255)                                                                                                   cagcGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGa          <  2:588718/134‑1 (MQ=255)                                                                                                     gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAggcgg                                                           <  1:705319/83‑1 (MQ=255)                                                                                                     gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAggcgg                                                           >  2:705319/1‑83 (MQ=255)                                                                                                     gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGaa         >  2:762137/1‑133 (MQ=255)                                                                                                        ccGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGt                     >  2:999999/1‑118 (MQ=255)                                                                                                        ccGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGt                     <  1:999999/118‑1 (MQ=255)                                                                                                           acgaGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATcaca  <  2:173062/134‑1 (MQ=255)                                                                                                                 cgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAAc        <  2:835661‑M1/102‑1 (MQ=255)                                                                                                                 cgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAAc        >  1:835661‑M1/21‑122 (MQ=255)                                                                                                                                     |                                                                                                            GCCACGTCTTCCTGCAGGCACAGCACGCGCAGCGCCGAGCAGCGCTGGCCGGCCGAATCGAAAGCGGAGCTGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACA  >  AM260479/3906580‑3906819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.