New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3906712 =	13 (0.510)	4 (0.170)	4/190	1.8	23.5%	coding (2666/3966 nt)	putA	bifunctional proline dehydrogenase and proline oxidase
	?	AM260479	3906752 =	14 (0.590)					coding (2626/3966 nt)	putA	bifunctional proline dehydrogenase and proline oxidase

TGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAGCGCGGCGCCCACGGTCTCGCCGCGGCCCGGCAGCAGCT  >  AM260479/3906650‑3906883                                                                                                       |                                                                                                                                    gttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccgccggccgcccgatcccgctgatcgcggagaccggcggCGTCGAGGCGGCCGGCGACg                                                                                                                  <  2:835661‑M2/20‑1 (MQ=255) gttcaccggctcgaccgaagtcgcgcgcatcctgcagcgcaacgtcgccggccgcctcgacgccgccggccgcccgatcccgctgatcgcggagaccggcggCGTCGAGGCGGCCGGCGACg                                                                                                                  >  1:835661‑M2/103‑122 (MQ=255)                       ttCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGa                                                                                  <  1:867481/132‑1 (MQ=255)                             cagcGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGa                                                                          <  2:588718/134‑1 (MQ=255)                               gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAggcgg                                                                                                                           <  1:705319/83‑1 (MQ=255)                               gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAggcgg                                                                                                                           >  2:705319/1‑83 (MQ=255)                               gcgcCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGaa                                                                         >  2:762137/1‑133 (MQ=255)                                  ccGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGt                                                                                     >  2:999999/1‑118 (MQ=255)                                  ccGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGt                                                                                     <  1:999999/118‑1 (MQ=255)                                     acgaGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATcaca                                                                  <  2:173062/134‑1 (MQ=255)                                           cgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAAc                                                                        >  1:835661‑M1/21‑122 (MQ=255)                                           cgtcgccggccgcctcgacgCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAAc                                                                        <  2:835661‑M1/102‑1 (MQ=255)                                                                      tctcCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAGCgcggcg                                 <  1:762137/134‑1 (MQ=255)                                                                       ctcCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACg                                                                                                                  <  1:831329/52‑1 (MQ=255)                                                                       ctcCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACg                                                                                                                  >  2:831329/1‑52 (MQ=255)                                                                         cccgatcccgctgatcgcggagaccggcggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCg                                                                                       <  1:838628‑M2/47‑1 (MQ=255)                                                                         cccgatcccgctgatcgcggagaccggcggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCg                                                                                       >  2:838628‑M2/31‑77 (MQ=255)                                                                          cgcgATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGa                                                                                                                    <  1:219969/47‑1 (MQ=255)                                                                          cgcgATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGa                                                                                                                    >  2:219969/1‑47 (MQ=255)                                                                                     ggATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAGCGCGGCGCCCACGGTCTcgccg                  <  2:441773/134‑1 (MQ=255)                                                                                                    cggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGc                                               >  1:346615‑M2/4‑90 (MQ=255)                                                                                                    cggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGc                                               <  2:346615‑M2/87‑1 (MQ=255)                                                                                                    cggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAgcgc                                     <  2:680478‑M2/97‑1 (MQ=255)                                                                                                    cggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAgcgc                                     >  1:680478‑M2/4‑100 (MQ=255)                                                                                                    cggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAGCGCGGCGCCCACGGTCTCGCCGCGGcc             <  2:922266‑M2/121‑1 (MQ=255)                                                                                                    cggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAGCGCGGCGCCCACGGTCTCGCCGCGGcc             >  1:922266‑M2/4‑124 (MQ=255)                                                                                                     ggCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAGCGCGGCGCCCACGGTCTCGCCGCGGCCCGGCAGCAGCt  >  1:732690‑M2/3‑134 (MQ=255)                                                                                                       |                                                                                                                                    TGAGGACATCGCCCACCACCTGTTCAGCCAGCGCCGACGAGTCGACGATCATCGCGTTCTGTCCGCCGGTCTCCGCGATCAGCGGGATCGGGCGGCCGGCGGCGTCGAGGCGGCCGGCGACGTTGCGCTGCAGGATGCGCGCGACTTCGGTCGAGCCGGTGAACATCACACCCTTGACGCGGGCGTCGCCGACCAGCGCGGCGCCCACGGTCTCGCCGCGGCCCGGCAGCAGCT  >  AM260479/3906650‑3906883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.