New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	= 1179700	7 (0.320)	3 (0.150)	3/188	1.8	26.7%	coding (961/1206 nt)	h16_B1043	conserved hypothetical protein
	?	AM260480	= 1179725	10 (0.490)					coding (986/1206 nt)	h16_B1043	conserved hypothetical protein

GCGCAATGGCGGGCCGCAGCTCAACCGGCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCGCAGGCGCTTGCCGCCGGGCAGGTGGTGGTGGACGGCTTCAAGGGGCCGCCGCTGTCGTTCCGCCGCTGGGACCGCCAGCTGCGCCAGCCGGTGTTGCTGGCCCACC  >  AM260480/1179579‑1179832                                                                                                                          |                                                                                                                                     gcgcAATGGCGGGCCGCAGCTCAACCGGCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTTCCCGGGGCCGGGt                                                                                                                          >  2:616071/1‑134 (MQ=255)        ggCGGGCCGCAGCTCAACCGGCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCg                                                                                                                    >  2:430994/1‑133 (MQ=255)                gCAGCTCAACCGGCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCg                                                                                                            <  2:279016‑M2/133‑2 (MQ=255)                   gCTCAACCGGCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCgcagg                                                                                                        <  1:875752‑M2/134‑6 (MQ=255)                         ccGGCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCGCAGGCGCTTg                                                                                                  <  1:279016/134‑1 (MQ=255)                           ggCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCgcctgtccggcaaacccggccccgggca                                                                                                          >  1:269653‑M1/1‑96 (MQ=255)                           ggCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCgcctgtccggcaaacccggccccgggca                                                                                                          <  2:269653‑M1/124‑29 (MQ=255)                                            gcggGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCGCAGGCGCTTGCCGCCGGGCAggtggtggt                                                                               <  1:379512/134‑1 (MQ=255)                                                      cGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCgcgccccgctctcggcaatggccttgaccgccacccaggc                                                                     >  1:616071‑M2/1‑94 (MQ=255)                                                                             gCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGGGGC‑‑‑‑‑‑GCgcctgtccggcaaacccggccccgggcaggcgcgccacgctctcggcaatggccttgaccgccacccaggcagcccagtcgtagccggtcatcg                                        >  1:616071‑M1/1‑40 (MQ=255)                                                                                                        gagaGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCGCAGGCGCTTGCCGCCGGGCAGGTGGTGGTGGACGGCTTCAAGGGGCCGCCGCTGTCGTTCcgccgc                                          >  1:490604/1‑111 (MQ=255)                                                                                                        gagaGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCGCAGGCGCTTGCCGCCGGGCAGGTGGTGGTGGACGGCTTCAAGGGGCCGCCGCTGTCGTTCcgccgc                                          <  2:490604/111‑1 (MQ=255)                                                                                                                     gcCTGCCCGGGGCCGGGTTTGCCGGACAGGCGCAGGCGCTTGCCGCCGGGCAGGTGGTGGTGGACGGCTTCAAGGGGCCGCCGCTGTCGTTCCGCCGCTGGGACCGCCAGCTGCGCCAGCCGGTGTTGCTGGcc      >  1:131968/1‑134 (MQ=255)                                                                                                                      cctgcgcctgtccggcaaacccggccccgggcaggcgcgccacgctctcggcaatggccttgaccgccacccaggcagcccagtcgtagccggtcatcggacggcccgccgcgcgcatgaagcgccggttgagc     <  1:875752‑M1/134‑130 (MQ=255)                                                                                                                        tGCCCGGGGCCGGGTTTGCCGGACAGGCgcaggcgcgccacgctctcggcaatggccttgaccgccacccaggcagcccagtcgtagccggtcatcggacggcccgccgcgcgcatgaagcgcc             <  2:269653‑M2/124‑97 (MQ=255)                                                                                                                        tGCCCGGGGCCGGGTTTGCCGGACAGGCgcaggcgcgccacgctctcggcaatggccttgaccgccacccaggcagcccagtcgtagccggtcatcggacggcccgccgcgcgcatgaagcgcc             >  1:269653‑M2/1‑28 (MQ=255)                                                                                                                          cgcctgtccggcaaacccggccccgggcaggcgcgccacgctctcggcaatggccttgaccgccacccaggcagcccagtcgtagccggtcatcggacggcccgccgcgcgcatgaagcgccggttgagctgc  <  2:279016‑M1/133‑133 (MQ=255)                                                                                                                          |                                                                                                                                     GCGCAATGGCGGGCCGCAGCTCAACCGGCGCTTCATGCGCGCGGCGGGCCGTCCGATGACCGGCTACGACTGGGCTGCCTGGGTGGCGGTCAAGGCCATTGCCGAGAGCGTGGCGCGCCTGCCCGGGGCCGGGTTTGCCGGACAGGCGCAGGCGCTTGCCGCCGGGCAGGTGGTGGTGGACGGCTTCAAGGGGCCGCCGCTGTCGTTCCGCCGCTGGGACCGCCAGCTGCGCCAGCCGGTGTTGCTGGCCCACC  >  AM260480/1179579‑1179832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.