| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974895 | 975157 | 263–1320 | 33 [0] | [0] 33 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 31 (1.370) | 21/182 | 0.2 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
CCGCGGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAG > AM260479/975031‑975270 | aggctctggccgctggggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGAt < 1:126551‑M2/7‑1 (MQ=255) gccgctggggcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGAccg < 2:273371‑M2/13‑1 (MQ=255) gcacggtgccgatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTc > 2:202971‑M2/111‑133 (MQ=255) gatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGa < 2:682735‑M2/17‑1 (MQ=255) gatgacccagcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGa > 1:682735‑M2/101‑117 (MQ=255) agcggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGc > 2:739397‑M2/93‑133 (MQ=255) cggccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCaaa > 2:453408‑M2/91‑134 (MQ=255) gccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGAcc > 1:291807‑M2/89‑100 (MQ=255) gccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGAcc < 2:291807‑M2/12‑1 (MQ=255) gccgcttttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAAc > 1:959999‑M2/89‑133 (MQ=255) ttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:959999‑M2/52‑1 (MQ=255) ttgggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 1:739397‑M2/52‑1 (MQ=255) gggtgcgggaaccatcctggccgcctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGt < 1:202971‑M2/54‑1 (MQ=255) cctggttaagatattggcctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTttc < 1:984324‑M2/78‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCgg < 1:1038102‑M2/40‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCgg > 2:1038102‑M2/39‑78 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 1:757329‑M2/39‑90 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 2:757329‑M2/52‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa > 2:246358‑M2/39‑121 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa < 1:246358‑M2/83‑1 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa > 2:935171‑M2/39‑121 (MQ=255) ctgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa < 1:935171‑M2/83‑1 (MQ=255) tgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt > 2:38369‑M2/38‑89 (MQ=255) tgtgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTAt < 1:38369‑M2/52‑1 (MQ=255) tgcgcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACg < 1:453408‑M2/99‑1 (MQ=255) gcagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGAcc > 2:485549‑M2/33‑134 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa > 2:257491‑M2/32‑114 (MQ=255) cagcgtttgcgcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCa < 1:257491‑M2/83‑1 (MQ=255) gcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCgg < 1:705255‑M2/60‑1 (MQ=255) gcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCgg > 2:705255‑M2/22‑81 (MQ=255) gcccactgttccaaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAg > 1:1015279‑M2/22‑134 (MQ=255) aaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTc > 1:45387‑M2/10‑116 (MQ=255) aaggtttgcTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTc < 2:45387‑M2/107‑1 (MQ=255) | CCGCGGTTATGTGAGCTTCAAAACCATGCGCACCGTGATCTTCCTGATCGCCGGAAAGCTCGACTTCTCCGCGATCAACCCGCATGCCGCATAACCCACTCATTTTTCAAAAGAGCCCAAGGTTTGCTCAAGATCGACCGCCGACGTGTCGAGTTCGAGCGTGTCGGCAAACCAGTTATGTTTGCGGATATAGGTGTGCGTTTTCTTCCAGGCCTGGGCCAGTACGACCTTGTCGGAAAG > AM260479/975031‑975270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |