| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 973838–974895 | 975157 | 263–1320 | 33 [0] | [0] 33 | [h16_A0881]–h16_A0882 | [h16_A0881],h16_A0882 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 973837 | NA (NA) | 31 (1.370) | 21/182 | 0.2 | NA | noncoding (2/1312 nt) | ISAE1 | insertion sequence ISAE1 isolog |
| ? | AM260479 | 975158 = | NA (NA) | intergenic (‑201/+329) | h16_A0881/h16_A0883 | ISAE1 Orf2 fusion protein/Hypothetical protein | |||||
AGGCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCG > AM260479/973711‑973950 | agGCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagat < 1:126551‑M1/134‑8 (MQ=255) gCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccg < 2:273371‑M1/132‑14 (MQ=255) gCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtc > 2:202971‑M1/1‑110 (MQ=255) gATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccga < 2:682735‑M1/117‑18 (MQ=255) gATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccga > 1:682735‑M1/1‑100 (MQ=255) aGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggc > 2:739397‑M1/1‑92 (MQ=255) cGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaa > 2:453408‑M1/1‑90 (MQ=255) gCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaac > 1:959999‑M1/1‑88 (MQ=255) gCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgacc > 1:291807‑M1/1‑88 (MQ=255) gCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgacc < 2:291807‑M1/100‑13 (MQ=255) ttGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:959999‑M1/133‑53 (MQ=255) ttGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 1:739397‑M1/133‑53 (MQ=255) gggTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgt < 1:202971‑M1/133‑55 (MQ=255) ccTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttc < 1:984324‑M1/134‑79 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca < 1:935171‑M1/121‑84 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca > 2:935171‑M1/1‑38 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca > 2:246358‑M1/1‑38 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca < 1:246358‑M1/121‑84 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 1:757329‑M1/1‑38 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 2:757329‑M1/90‑53 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcgg < 1:1038102‑M1/78‑41 (MQ=255) cTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcgg > 2:1038102‑M1/1‑38 (MQ=255) tgtgCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat > 2:38369‑M1/1‑37 (MQ=255) tgtgCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttat < 1:38369‑M1/89‑53 (MQ=255) tgCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacg < 1:453408‑M1/134‑100 (MQ=255) gcAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgacc > 2:485549‑M1/1‑32 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca < 1:257491‑M1/114‑84 (MQ=255) cAGCGTTTGCGCCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttcca > 2:257491‑M1/1‑31 (MQ=255) gcCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtcggaaag > 1:1015279‑M1/1‑21 (MQ=255) gcCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcgg > 2:705255‑M1/1‑21 (MQ=255) gcCCACTGTTCCAAGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcgg < 1:705255‑M1/81‑61 (MQ=255) aaGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtc > 1:45387‑M1/1‑9 (MQ=255) aaGGTTTGCtcaagatcgaccgccgacgtgtcgagttcgagcgtgtcggcaaaccagttatgtttgcggatataggtgtgcgttttcttccaggcctgggccagtacgaccttgtc < 2:45387‑M1/116‑108 (MQ=255) | AGGCTCTGGCCGCTGGGGCACGGTGCCGATGACCCAGCGGCCGCTTTTGGGTGCGGGAACCATCCTGGCCGCCTGGTTAAGATATTGGCCTGTGCGCAGCGTTTGCGCCCACTGTTCCAAGGTTTGCCTCTTTTGAATTTCAAGTGGGTGGTATCGTGGCGGGTTTCAGGTAAAGAGCAACAAGAGCGATGCATAGCAAACTGTTTGAAGCAGCCCTTGGCATAAGCGATCCGTGGTTCG > AM260479/973711‑973950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |