New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 3257320	26 (1.030)	4 (0.200)	4/164	1.6	22.3%	coding (1345/1626 nt)	asdA	L‑Aspartate decarboxylase
	?	AM260479	= 3257300	7 (0.340)					coding (1325/1626 nt)	asdA	L‑Aspartate decarboxylase

GATACGCCGGACAACTACAAGAACGCGATGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAGGCGATCGGTCCGGACTTCGTCAAATGGGTGATGAACTCGGTCGAGCCGAACGAATT  >  AM260479/3257179‑3257387                                                                                                                          |                                                                                        gATACGCCGGACAACTACAAGAACGCGATGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgctgctcgatat                                                                             <  2:118880‑M2/134‑13 (MQ=255) gATACGCCGGACAACTACAAGAACGCGATGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgctgctcgatat                                                                             >  2:111538‑M2/1‑122 (MQ=255)                    aGAACGCGATGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAg                                                          <  2:995176/134‑1 (MQ=255)                     gAACGCGATGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAgg                                                         <  1:118880/134‑1 (MQ=255)                           gATGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgc                                                                                       <  2:198258‑M2/98‑3 (MQ=255)                           gATGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGC                                                                                       <  1:198258‑M1/98‑1 (MQ=255)                             tGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgctgctcgatat                                                                             >  2:153950‑M2/1‑94 (MQ=255)                             tGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATAT                                                                             >  1:153950‑M1/1‑106 (MQ=255)                                aGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAg                                                          <  2:1043674/122‑1 (MQ=255)                                aGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAg                                                          >  1:1043674/1‑122 (MQ=255)                                                              tGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgctgctcgatatcgagcagcg                                                                    >  1:594648‑M2/1‑61 (MQ=255)                                                              tGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgctgctcgatatcgagcagcg                                                                    <  2:594648‑M2/82‑22 (MQ=255)                                                                tACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAGGCGATCGGTCCGGACTTCGTCAAATGGGTGATGAACTCGGTCg               <  1:85021/133‑1 (MQ=255)                                                                    gcgAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgctgctcgatatcgagcagcgtgtagtagtccacggcattcgggtcgtcgc                                      <  2:359842‑M2/106‑52 (MQ=255)                                                                    gcgAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCgtgtagtagtccacggcattcgggtcgtcgc                                      <  1:359842‑M1/106‑32 (MQ=255)                                                                        gaTCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAGGCGATCGGTCCGGACTTCGTCAAATGGGTGATGAACTCGGTCGAGCcgaacg      <  2:677548/134‑1 (MQ=255)                                                                         aTCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgctgctcgatat                                                                             >  2:767636‑M2/1‑50 (MQ=255)                                                                         aTCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACgc                                                                                       >  2:284199‑M2/1‑50 (MQ=255)                                                                         aTCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATAT                                                                             >  1:767636‑M1/1‑62 (MQ=255)                                                                         aTCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGC                                                                                       >  1:284199‑M1/1‑52 (MQ=255)                                                                            ggCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAGGCGATCGGTCCGGACTTCGTCAAATGGGTGATGAACTCGGTCGAGCCGAACGAAtt  >  1:107212/1‑134 (MQ=255)                                                                                            gCGACGACCCGAATGCCGTGGACTACTACACgctgctcgatatcgagcagcgtgtagtagtccacggcattcgggtcgtcgctttccggcgcgatgccgatctcgc              <  1:359842‑M2/106‑76 (MQ=255)                                                                                            gCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCgtgtagtagtccacggcattcgggtcgtcgctttccggcgcgatgccgatctcgc              <  2:359842‑M1/106‑56 (MQ=255)                                                                                                                          cGCTGCTCGATATCGAGCAGCgtgtagtagtccacggcattcgggtcgtcgctttccggcgcgatgccgatctcgcggtaca        >  1:594648‑M1/1‑21 (MQ=255)                                                                                                                          cGCTGCTCGATATCGAGCAGCgtgtagtagtccacggcattcgggtcgtcgctttccggcgcgatgccgatctcgcggtaca        <  2:594648‑M1/82‑62 (MQ=255)                                                                                                                          |                                                                                        GATACGCCGGACAACTACAAGAACGCGATGAAGCGGCTGATCCGCAGCCGCAAGGCCGCGCTGTACCGCGAGATCGGCATCGCGCCGGAAAGCGACGACCCGAATGCCGTGGACTACTACACGCTGCTCGATATCGAGCAGCTGGGCGGCAAGGCGATCGGTCCGGACTTCGTCAAATGGGTGATGAACTCGGTCGAGCCGAACGAATT  >  AM260479/3257179‑3257387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.