New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 = 27140769 (0.410)4 (0.200) 4/186 1.6 31.7% coding (282/756 nt) h16_B2404 hypothetical membrane spanning protein
?AM260480 = 2714093 9 (0.450)coding (265/756 nt) h16_B2404 hypothetical membrane spanning protein

TACAGCACCAGCGCCACACCCAAGGCCGAGGTCGCGTGCGTCGTCATGCCGGCCGGCACCCATGCCGCGCACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCGAAGCGCGGCCCGCCGAACAGCTGCACCACGTTGGTCACCATCGACGG  >  AM260480/2714017‑2714195
                                                                            |                                                                                                      
tACAGCACCAGCGCCACACCCAAGGCCGAGGTCGCGTGCGTCGTCATGCCGGCCGGCACCCATGCCGCGCACAGCCAggtgccggccggcatgacgacgcacgc                                                                             >  1:498473‑M2/1‑77 (MQ=255)
tACAGCACCAGCGCCACACCCAAGGCCGAGGTCGCGTGCGTCGTCATGCCGGCCGGCACCCATGCCGCGCACAGCCAggtgccggccggcatgacgacgcacgc                                                                             <  2:498473‑M2/104‑28 (MQ=255)
tACAGCACCAGCGCCACACCCAAGGCCGAGGTCGCGTGCGTCGTCATGCCGGCCGGCACCCATGCCGCGCACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCg                                                 >  1:994632/1‑132 (MQ=255)
           cgcCACACCCAAGGCCGAGGTCGCGTGCGTCGTCATGCCGGCCGGCACCCATGCCGCGCACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCGAAGCGCGGCccgc                                    <  2:994632/134‑1 (MQ=255)
              cacaCCCAAGGCCGAGGTCGCGTGCGTCGTCATGCCGGCCGGCACCCATGCCGCGCACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCGAAGCGCGGCccgccg                                  >  1:623682/1‑133 (MQ=255)
                                            cATGCCGGCCGGCACCCATGCCGCGCACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCg                                                                           <  1:110933/62‑1 (MQ=255)
                                            cATGCCGGCCGGCACCCATGCCGCGCACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCg                                                                           >  2:110933/1‑62 (MQ=255)
                                                   gccggcACCCATGCCGCGCACAGCCAggtgccggccggcatgacgacgcacgcga                                                                           <  1:864374‑M2/55‑30 (MQ=255)
                                                   gccggcACCCATGCCGCGCACAGCCAggtgccggccggcatgacgacgcacgcga                                                                           >  2:864374‑M2/1‑26 (MQ=255)
                                                                  gcgcACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCGAAGCGCGGCCCGCCGAACAGCTGCACCACGTTGGTCACCATCGACgg  <  1:130049/113‑1 (MQ=255)
                                                                  gcgcACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCGAAGCGCGGCCCGCCGAACAGCTGCACCACGTTGGTCACCATCGACgg  >  2:130049/1‑113 (MQ=255)
                                                                      acaGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCGAAGCGCGGCCCGCCGAACAGCTGcac                       <  1:39686/88‑1 (MQ=255)
                                                                      acaGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCGAAGCGCGGCCCGCCGAACAGCTGcac                       >  2:39686/1‑88 (MQ=255)
                                                                            |                                                                                                      
TACAGCACCAGCGCCACACCCAAGGCCGAGGTCGCGTGCGTCGTCATGCCGGCCGGCACCCATGCCGCGCACAGCCAGGTGCCGGCGCAGATCGCCACCAGCATCGGCCACAGCCGTAGCATCAGCTGCCCGAAGCGCGGCCCGCCGAACAGCTGCACCACGTTGGTCACCATCGACGG  >  AM260480/2714017‑2714195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.