Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260480	2677902	2677905	4	2 [0]	[0] 2	fliK1	flagellar hook‑length control protein

CGGTGCCGCAGCGGCAGAGCCGGGGCGGCCCTCAGCGCCGCCGCTGATTCCGGC  >  AM260480/2677906‑2677959 |                                                      cggTGCCGCAGCGGCAGAGCCGGGGCGGCCCTCAGCGCCGCCGCTGATTCCGGc  >  1:209667/1‑54 (MQ=255) cggTGCCGCAGCGGCAGAGCCGGGGCGGCCCTCAGCGCCGCCGCTGATTCCGGc  <  2:209667/54‑1 (MQ=255) |                                                      CGGTGCCGCAGCGGCAGAGCCGGGGCGGCCCTCAGCGCCGCCGCTGATTCCGGC  >  AM260480/2677906‑2677959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑