New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 286484	16 (0.590)	4 (0.160)	3/198	2.3	20.5%	intergenic (+6/+1)	h16_A0274/h16_A0275	lactoylglutathione lyase/transcriptional regulator, AraC‑family
	?	AM260479	= 286489	16 (0.630)					coding (974/978 nt)	h16_A0275	transcriptional regulator, AraC‑family

GTCAATATCCTGATGCACACCTGAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/286455‑286484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcggAATGACCGCGCTCAGGTGTGCATCAGGATATTGACCAGCCGGCCCAACGGATCGCGCACGTAGAAGCGGCGCACACCCCATGGCTCGTCGGCGGGACCGTACTCGATGGCGAAGCCGCCGGCCAG  <  AM260479/286489‑286365                                                                                                                                                             GTCAATATCCTGATGCACACCTGAGCGCGGAATGACCGCGCTCAGGTGTGCATCAGGATATTGACCAGCCGGCCCAACGGATCGCGCACGTAGAAGCGGCGCACACCCCATGGCTCGTCGGCGGGACCGTACTC                       >  2:160842/1‑134 GTCAATATCCTGATGCACACCTGAGCGCGGAATGACCGCGCTCAGGTGTGCATCAGGATATTGACCAGCCGGCCCAACGGATCGCGCACGTAG                                                                <  1:351668/93‑1 GTCAATATCCTGATGCACACCTGAGCGCGGAATGACCGCGCTCAGGTGTGCATCAGGATATTGACCAGCCGGCCCAACGGATCGCGCACGTAG                                                                >  2:351668/1‑93                      TGAGCGCGGAATGACCGCGCTCAGGTGTGCATCAGGATATTGACCAGCCGGCCCAACGGATCGCGCACGTAGAAGCGGCGCACACCCCATGGCTCGTCGGCGGGACCGTACTCGATGGCGAAGCCGCCGGCCAG  >  1:1034213/1‑134                                                                                                                                                             GTCAATATCCTGATGCACACCTGAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/286455‑286484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcggAATGACCGCGCTCAGGTGTGCATCAGGATATTGACCAGCCGGCCCAACGGATCGCGCACGTAGAAGCGGCGCACACCCCATGGCTCGTCGGCGGGACCGTACTCGATGGCGAAGCCGCCGGCCAG  <  AM260479/286489‑286365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.