New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 286484	16 (0.590)	4 (0.160)	3/198	2.3	20.5%	intergenic (+6/+1)	h16_A0274/h16_A0275	lactoylglutathione lyase/transcriptional regulator, AraC‑family
	?	AM260479	= 286489	16 (0.630)					coding (974/978 nt)	h16_A0275	transcriptional regulator, AraC‑family

CTGGCCGGCGGCTTCGCCATCGAGTACGGTCCCGCCGACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAGCACGCGCGGAAGGCCTGCACGCTGGCGAAGCCGCTTTTCAGCGCAATCTCTT  >  AM260479/286365‑286603                                                                                                                             |                                                                                                                   cTGGCCGGCGGCTTCGCCATCGAGTACGGTCCCGCCGACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTccgcgctca                                                                                                           >  1:1034213‑M2/1‑125 (MQ=255)                      gAGTACGGTCCCGCCGACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTccgcgctcaggtgtgcatcaggatattgac                                                                                      >  2:160842‑M2/1‑104 (MQ=255)                               cccGCCGACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCg                                                                             >  2:832268/1‑134 (MQ=255)                               cccGCCGACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCg                                                                             >  2:535564/1‑134 (MQ=255)                                ccgccgACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCg                                                                             <  2:331435/133‑1 (MQ=255)                                ccgccgACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCg                                                                             <  1:832268/133‑1 (MQ=255)                                  gccgACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTgg                                                                          >  2:364629/1‑134 (MQ=255)                                                        gccgcTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGc                                                                                             >  1:1073272/1‑93 (MQ=255)                                                        gccgcTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGc                                                                                             <  2:1073272/93‑1 (MQ=255)                                                         ccgcTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAGCAc                                                   >  1:896350/1‑134 (MQ=255)                                                              tCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAGCAcgcgcg                                              >  1:58014/1‑134 (MQ=255)                                                               cTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTccgcgctcaggtgtgcatcaggatattgac                                                                                      >  2:351668‑M2/1‑63 (MQ=255)                                                               cTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTccgcgctcaggtgtgcatcaggatattgac                                                                                      <  1:351668‑M2/93‑31 (MQ=255)                                                                       gcgATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAGCACGCGCGGaatgaccg                                     <  2:547591/134‑7 (MQ=255)                                                                              gTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAGCACGCGCGGAAGGCCTGCACGCTg                              >  2:35497/1‑134 (MQ=255)                                                                                           gTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAg                                                      <  1:654557/97‑1 (MQ=255)                                                                                           gTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAg                                                      >  2:654557/1‑97 (MQ=255)                                                                                                tatCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTg                                                                                              >  1:940337/1‑52 (MQ=255)                                                                                                tatCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTg                                                                                              <  2:940337/52‑1 (MQ=255)                                                                                                          cacaCCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAGCACGCGCGGAAGGCCTGCACGCTGGCGAAGCCGCTTTTCAGCGCAATCTCtt  >  1:824709/1‑134 (MQ=255)                                                                                                                             |                                                                                                                   CTGGCCGGCGGCTTCGCCATCGAGTACGGTCCCGCCGACGAGCCATGGGGTGTGCGCCGCTTCTACGTGCGCGATCCGTTGGGCCGGCTGGTCAATATCCTGATGCACACCTGAGCGCGGTCATTCCGCGCTGCCGGCGCGGGCTTGCCGGTAGGCCTTCGGCGTGGCCGGCTCTGCCTTGTTCCAGCACGCGCGGAAGGCCTGCACGCTGGCGAAGCCGCTTTTCAGCGCAATCTCTT  >  AM260479/286365‑286603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.