New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 3548678 =13 (0.480)8 (0.310) 6/204 1.6 35.2% coding (843/1002 nt) h16_A3281 conserved hypothetical protein
?AM260479 3548702 = 17 (0.650)coding (819/1002 nt) h16_A3281 conserved hypothetical protein

CACTCGCTGGAGGACCGCATCGTCAAGCGGTTCATGGCGGCGCACGCCCGTCCCCAGCAGGATGCCGACCCGGCGCTGCGGCGCGCGCCGCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3548773‑3548678
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAT  >  AM260479/3548702‑3548755
                                                                                                                                                      
CACTCGCTGGAGGACCGCATCGTCAAGCGGTTCATGGCGGCGCACGCCCGTCCCCAGCAGGATGCCGACCCGGCGCTTCGGCGCGCGCCGCTGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGC                    >  1:1075783/1‑132
CACTCGCTGGAGGACCGCATCGTCAAGCGGTTCATGGCGGCGCACGCCCGTCCCCAGCAGGATGCCGACCCGGCGCTGCGGCGCGCGCCGCTGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGC                    <  2:1075783/132‑1
                     GTCAAGCGGTTCATGGCGGCGCACGCCCGTCCCCAGCAGGATGCCGACCCGGCGCTGCGGCGCGCGCCGCTGCGCC                                                       >  1:836779/1‑76
                     GTCAAGCGGTTCATGGCGGCGCACGCCCGTCCCCAGCAGGATGCCGACCCGGCGCTGCGGCGCGCGCCGCTGCGCC                                                       <  2:836779/76‑1
                                                                                          CTGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAT  >  1:69942/1‑60
                                                                                          CTGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAT  >  1:821753/1‑60
                                                                                          CTGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAT  <  2:69942/60‑1
                                                                                          CTGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAT  <  2:821753/60‑1
                                                                                                                                                      
CACTCGCTGGAGGACCGCATCGTCAAGCGGTTCATGGCGGCGCACGCCCGTCCCCAGCAGGATGCCGACCCGGCGCTGCGGCGCGCGCCGCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260479/3548773‑3548678
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAT  >  AM260479/3548702‑3548755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.