New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	3548678 =	13 (0.480)	8 (0.310)	6/204	1.6	35.2%	coding (843/1002 nt)	h16_A3281	conserved hypothetical protein
	?	AM260479	3548702 =	17 (0.650)					coding (819/1002 nt)	h16_A3281	conserved hypothetical protein

ACGCGCATCACGGCCGAGCGCGCGCGCGGGTTGGCGGCCACCTCTTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGTCCTCCAGCGAGTGGAAGCTGATCACCACCAGGCGCCCTCCGACCTGCAGCAGTTCATA  >  AM260479/3548574‑3548818                                                                                                                                 |                                                                                                                     aCGCGCATCACGGCCGAGCGCGCGCGCGGGTTGGCGGCCACCTCTTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTc                                                                                                                 <  2:747334/134‑1 (MQ=255)                     cgcgcgcgGGTTGGCGGCCACCTCTTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACggg                                                                                             >  1:392479/1‑134 (MQ=255)                     cgcgcgcgGGTTGGCGGCCACCTCTTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACggg                                                                                             >  2:422301/1‑134 (MQ=255)                           cgGGTTGGCGGCCACCTCTTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTgcg                                                                                       >  2:795055/1‑134 (MQ=255)                                 cactcgctggaggaccgcatcgtcaagcggttcatggcggcgcacgcccgtccccagcaggatgccgacccggcgcttcggcgcgcgccgctgcgcCGGGTCGGCATCCTGCTGGGGACGGGCGTGcgccgc                                                                                   >  1:1075783‑M2/97‑132 (MQ=255)                                 cactcgctggaggaccgcatcgtcaagcggttcatggcggcgcacgcccgtccccagcaggatgccgacccggcgctgcggcgcgcgccgctgcgcCGGGTCGGCATCCTGCTGGGGACGGGCGTGcgccgc                                                                                   <  2:1075783‑M2/36‑1 (MQ=255)                                        aCCTCTTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCg                                                                          >  2:870863/1‑134 (MQ=255)                                            ctTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCg                                                                                           <  1:751032/113‑1 (MQ=255)                                            ctTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCg                                                                                           >  2:751032/1‑113 (MQ=255)                                                 gggCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAt                                                                 >  2:966971/1‑134 (MQ=255)                                                      gtcaagcggttcatggcggcgcacgcccgtccccagcaggatgccgacccggcgctgcggcgcgcgccgctgcgcc                                                                                                                      >  1:836779‑M2/76‑76 (MQ=255)                                                      gtcaagcggttcatggcggcgcacgcccgtccccagcaggatgccgacccggcgctgcggcgcgcgccgctgcgcc                                                                                                                      <  2:836779‑M2/1‑1 (MQ=255)                                                           tGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTc                                                                                                                 >  1:518869/1‑76 (MQ=255)                                                           tGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTc                                                                                                                 <  2:518869/76‑1 (MQ=255)                                                           tGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGtcctc                                                        >  1:266499/1‑133 (MQ=255)                                                                     gcggcgcacgcccgtccccagcaggatgccgacccgGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGTCCTCCAGCGAGTg                                               <  2:1075783‑M1/96‑1 (MQ=255)                                                                     gcggcgcacgcccgtccccagcaggatgccgacccgGCGCAGCGGCGCGCGCCGAAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGTCCTCCAGCGAGTg                                               >  1:1075783‑M1/37‑132 (MQ=255)                                                                                                    gCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGTCCTCCAGCGAGTGGAAGCTGATCACCACCAGGCGCCCTCCGACCTg              <  2:392479/134‑1 (MQ=255)                                                                                                        gGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGAc                                                                    <  2:836779‑M1/75‑1 (MQ=255)                                                                                                        gGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGAc                                                                    >  1:836779‑M1/2‑76 (MQ=255)                                                                                                             aGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGTCCTCCAGCGAGTGGAAGCTGATCACCACCAGGCGCCCTCCGACCTGCAGCAGtt      >  1:395030/1‑133 (MQ=255)                                                                                                              gcggcgCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCg                                                                                           <  1:984213/47‑1 (MQ=255)                                                                                                              gcggcgCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCg                                                                                           >  2:984213/1‑47 (MQ=255)                                                                                                                ggcgCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGTCCTCCAGCGAGTGGAAGCTGATCACCACCAGGCGCCCTCCGACCTGCAGCAGTTCATa  <  1:422301/134‑1 (MQ=255)                                                                                                                ggcgCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGTCCTCCAGCGAGTGGAAGCTGATCACCACCAGGCGCCCTCCGACCTGCAGCAGTTCATa  <  2:395030/134‑1 (MQ=255)                                                                                                                           ctgcgcCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAt                                                                 <  2:821753‑M2/54‑1 (MQ=255)                                                                                                                           ctgcgcCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAt                                                                 <  2:69942‑M2/54‑1 (MQ=255)                                                                                                                           ctgcgcCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAt                                                                 >  1:821753‑M2/7‑60 (MQ=255)                                                                                                                           ctgcgcCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGAt                                                                 >  1:69942‑M2/7‑60 (MQ=255)                                                                                                                                 |                                                                                                                     ACGCGCATCACGGCCGAGCGCGCGCGCGGGTTGGCGGCCACCTCTTCAGGGCCCGGCTTGTAGCGGCCGAGCAGGCGCAGCGTCGGTTGCGGCAGGTCGGCCGCGCGCAGCGGCGCGCGCCGCAGCGCCGGGTCGGCATCCTGCTGGGGACGGGCGTGCGCCGCCATGAACCGCTTGACGATGCGGTCCTCCAGCGAGTGGAAGCTGATCACCACCAGGCGCCCTCCGACCTGCAGCAGTTCATA  >  AM260479/3548574‑3548818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.