New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 380177817 (0.630)6 (0.240) 6/192 1.5 21.7% coding (163/699 nt) h16_A3529 Acetyltransferase
?AM260479 = 3801935 28 (1.140)coding (320/699 nt) h16_A3529 Acetyltransferase

CGCACTGACCGACGAAGATCTGCGCAAGGCAGCCGAAGCCGCACAGGCCACCCACCGCGCCACCGTACTGGTGCGCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/3801648‑3801778
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctgggcgTTGTCGCGCAGGTTGGCGAAGTGGCCCACGCCGATCAGTTCGAGCTTGTCGTCGTAGACGCCGAACACGCTGTCATGGTCGAAGTCGATGCTGTCGACATAGGCTTCGATCACG  <  AM260479/3801935‑3801822
                                                                                                                                                                                                                                                     
CGCACTGACCGACGAAGATCTGCGCAAGGCAGCCGAAGCCGCACAGGCCACCCACCGCGCCACCGTACTGGTGCGCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCG                                                                                                                    >  1:396326/1‑131
CGCACTGACCGACGAAGATCTGCGCAAGGCAGCCGAAGCCGCACAGGCCACCCACCGCGCCACCGTACTGGTGCGCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCG                                                                                                                    <  2:396326/131‑1
                          AGGCAGCCGAAGCCGCACAGGCCACCCACCGCGCCACCGTACTGGTGCGCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCGTTGTCGCGCAGGTTGGCGAAGTGGCCCAC                                                                                       >  2:405748/1‑134
                                CCGAAGCCGCACAGGCCACCCACCGCGCCACCGTACTGGTGCGCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCGTTGTCGCGCAGGTTGGCGAAGTGGCCCACGCCGAT                                                                                 <  1:405748/134‑1
                                                                     GGTGCGCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCGTTGTCGCGCAGG                                                                                                        <  1:243404/74‑1
                                                                     GGTGCGCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCGTTGTCGCGCAGG                                                                                                        >  2:243404/1‑74
                                                                          GCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCG                                                                                                                    <  1:380477/57‑1
                                                                          GCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCG                                                                                                                    >  2:380477/1‑57
                                                                            GAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCGTTGTCGCGCAGGTTGGCGAAG                                                                                               >  1:6801/1‑76
                                                                            GAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCGTTGTCGCGCAGGTTGGCGAAG                                                                                               <  2:6801/76‑1
                                                                               CTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTG                                                                                                                        >  1:507918/1‑48
                                                                               CTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTG                                                                                                                        <  2:507918/48‑1
                                                                                                                         GCCCTGGGCGTTGTCGCGCAGGTTGGCGAAGTGGCCCACGCCGATCAGTTCGAGCTTGTCGTCGTAGACGCCGAACACGCTGTCATGGTCGAAGTCGATGCTGTCGACATAGGCTTCGATCACG  <  1:517357/124‑1
                                                                                                                         GCCCTGGGCGTTGTCGCGCAGGTTGGCGAAGTGGCCCACGCCGATCAGTTCGAGCTTGTCGTCGTAGACGCCGAACACGCTGTCATGGTCGAAGTCGATGCTGTCGACATAGGCTTCGATCACG  >  2:517357/1‑124
                                                                                                                                                                                                                                                     
CGCACTGACCGACGAAGATCTGCGCAAGGCAGCCGAAGCCGCACAGGCCACCCACCGCGCCACCGTACTGGTGCGCGAGCTGGCGGCCCACCACCGCTCGCGCCTGCTGAAGCATTTCCTCGCCCTGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM260479/3801648‑3801778
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctgggcgTTGTCGCGCAGGTTGGCGAAGTGGCCCACGCCGATCAGTTCGAGCTTGTCGTCGTAGACGCCGAACACGCTGTCATGGTCGAAGTCGATGCTGTCGACATAGGCTTCGATCACG  <  AM260479/3801935‑3801822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.