New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	588488 =	17 (0.600)	4 (0.150)	4/198	2.1	25.9%	coding (238/741 nt)	h16_B0521	conserved hypothetical protein
	?	AM260480	588510 =	7 (0.260)					coding (216/741 nt)	h16_B0521	conserved hypothetical protein

TCTCGAGCCAGCTGAGCCAATGGCTTGGCTGGGCGGACGCGATCGCGCTGTCATCGGCGCTGAAGGCCAATGCGCCGGCAACGCCGCCTGCCGCACGTGCTGCCGACAGCACTGAGGCACGCGAATGCGCGCGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/588625‑588488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtgcCTCAGTGCTGTCGGCAGCACGTGCGGCAGGCGGCGTTGCCGGCGCATTGGCCTTCAGCGCCGATGACAGCGCGATCGCGTCCGCCCAGCCAAG  >  AM260480/588510‑588602                                                                                                                                                                                                                                         TCTCGAGCCAGCTGAGCCAATGGCTTGGCTGGGCGGACGCGATCGCGCTGTCATCGGCGCTGAAGGCCAATGCGCCGGCAACGCCGCCTGCCGCACGTGCTGCCGACAGCACTGAGGCACGCGAATGCGCGCGC                                                                                                   >  2:399468/1‑134                                                                                                        CGACAGCACTGAGGCACGCGAATGCGCGCGCGTGCCTCAGTGCTGTCGGCAGCACGTGCGGCAGGCGGCGTTGCCGGCGCATTGGCCTTCAGCGCCGATGACAGCGCGATCGCGTCCGCCCAGCCAAG  >  1:1077898/1‑128                                                                                                        CGACAGCACTGAGGCACGCGAATGCGCGCGCGTGCCTCAGTGCTGTCGGCAGCACGTGCGGCAGGCGGCGTTGCCGGCGCATTGGCCTTCAGCGCCGATGACAGCGCGATCGCGTCCGCCCAGCCAAG  <  2:1077898/128‑1                                                                                                                  GAGGCACGCGAATGCGCGCGCGTGCCTCAGTGCTGTCGGCAGCACGTGCGGCAGGCGGCGTTGCCGGCGCATTGGCCTTCAGCGCCGATGA                             <  1:581648/91‑1                                                                                                                  GAGGCACGCGAATGCGCGCGCGTGCCTCAGTGCTGTCGGCAGCACGTGCGGCAGGCGGCGTTGCCGGCGCATTGGCCTTCAGCGCCGATGA                             >  2:581648/1‑91                                                                                                                                                                                                                                         TCTCGAGCCAGCTGAGCCAATGGCTTGGCTGGGCGGACGCGATCGCGCTGTCATCGGCGCTGAAGGCCAATGCGCCGGCAACGCCGCCTGCCGCACGTGCTGCCGACAGCACTGAGGCACGCGAATGCGCGCGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AM260480/588625‑588488 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtgcCTCAGTGCTGTCGGCAGCACGTGCGGCAGGCGGCGTTGCCGGCGCATTGGCCTTCAGCGCCGATGACAGCGCGATCGCGTCCGCCCAGCCAAG  >  AM260480/588510‑588602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.