New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 3756841 =17 (0.630)4 (0.160) 4/198 2.0 20.6% coding (277/1230 nt) h16_A3488 dienelactone hydrolase or related enzyme
?AM260479 3756900 = 15 (0.590)coding (218/1230 nt) h16_A3488 dienelactone hydrolase or related enzyme

CCACGTCGGGCAGCCGGCAGGCCGCCAGGTAGGCCAGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAGGTCGGGCACCAGCACCGTATAGCCCTCCTCGGCG  >  AM260479/3756709‑3756971
                                                                                                                                    |                                                                                                                                  
ccACGTCGGGCAGCCGGCAGGCCGCCAGGTAGGCCAGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGccc                                                                                                                                   <  2:1086188/134‑1 (MQ=255)
   cGTCGGGCAGCCGGCAGGCCGCCAGGTAGGCCAGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCcgcg                                                                                                                                >  1:457104/1‑134 (MQ=255)
    ttgtgccaggagatcttcggcgtcaacgcgaccatgcggcaggtggcggactactacgccgaggagggctatacggtgctggtgcccgacctgttctggcgcatcgcgcccgggatcgagctgaccgaCCGCgg                                                                                                                               <  2:479176‑M1/6‑1 (MQ=255)
         gCAGCCGGCAGGCCGCCAGGTAGGCCAGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTtcg                                                                                                                          <  2:397345/134‑1 (MQ=255)
         gCAGCCGGCAGGCCGCCAGGTAGGCCAGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTtcg                                                                                                                          <  2:273665/134‑1 (MQ=255)
                  aGGCCGCCAGGTAGGCCAGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAActgc                                                                                                                 >  1:314379/1‑134 (MQ=255)
                   ggCCGCCAGGTAGGCCAGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAActgct                                                                                                                <  2:314379/134‑1 (MQ=255)
                                   aGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAgcgc                                                                                                >  1:300924/1‑134 (MQ=255)
                                                     aaGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTcgcc                                                                              >  2:110081/1‑134 (MQ=255)
                                                            cgccgaggagggctatacggtgctggtgcccgacctgttctggcgcatcgcgcccgggatcgagctgaccgaCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGa                                                                                        >  2:915072‑M1/73‑117 (MQ=255)
                                                            cgccgaggagggctatacggtgctggtgcccgacctgttctggcgcatcgcgcccgggatcgagctgaccgaCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGa                                                                                        <  1:915072‑M1/45‑1 (MQ=255)
                                                               cGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGcggtcggt                                                                     >  1:129403/1‑133 (MQ=255)
                                                                                    ggtgcccgacctgttctggcgcatcgcgcccgggatcgagctgaccgaCcgc                                                                                                                                 <  1:575849‑M1/4‑1 (MQ=255)
                                                                                    ggtgcccgacctgttctggcgcatcgcgcccgggatcgagctgaccgaCcgc                                                                                                                                 >  2:575849‑M1/49‑52 (MQ=255)
                                                                                    ggtgcccgacctgttctggcgcatcgcgcccgggatcgagctgaccgaCCGCGGCTtcg                                                                                                                          <  2:265812‑M1/11‑1 (MQ=255)
                                                                                    ggtgcccgacctgttctggcgcatcgcgcccgggatcgagctgaccgaCCGCGGCTtcg                                                                                                                          >  1:265812‑M1/49‑59 (MQ=255)
                                                                                        ccGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATgcgc                                            >  2:28998/1‑133 (MQ=255)
                                                                                               cgcaGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAg                                    <  2:129403/134‑1 (MQ=255)
                                                                                               cgcaGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAg                                    <  1:982229/134‑1 (MQ=255)
                                                                                                          aaGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAGGTCGGGCAcc                          <  2:300924/133‑1 (MQ=255)
                                                                                                          aaGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAGGTCGGGCAcc                          <  1:110081/133‑1 (MQ=255)
                                                                                                                     ccACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAGGTCGGGCACCAGCACCGTATAg              >  2:314284/1‑134 (MQ=255)
                                                                                                                        caTCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAGGTCGGGCACCAGCACCGTATAGccc           <  1:28998/134‑1 (MQ=255)
                                                                                                                                   cccGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAGGTCGGGCACCAGCACCGTATAGCCCTCCTCGGCg  >  2:366270/1‑132 (MQ=255)
                                                                                                                                    |                                                                                                                                  
CCACGTCGGGCAGCCGGCAGGCCGCCAGGTAGGCCAGCTTGCCGCCCAGGCAGAAGCCCAGCACGCCGGTCTGGCCGACGCATTCCGGCCGCGCACGCAGCGCTTCAAGCGCGGCGCCCACATCCTGCACGCCCGCGGCTTCGTCGAACTGCTGGTACAGGCCCAGCGCCCGCTGGAAGTCCTCGCCGCGGTCGGTCAGCTCGATCCCGGGCGCGATGCGCCAGAACAGGTCGGGCACCAGCACCGTATAGCCCTCCTCGGCG  >  AM260479/3756709‑3756971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.