New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	202081 =	24 (0.840)	5 (0.220)	5/172	1.6	23.0%	coding (583/1668 nt)	h16_B0178	hemolysin activation/secretion protein
	?	AM260480	202101 =	14 (0.610)					coding (563/1668 nt)	h16_B0178	hemolysin activation/secretion protein

GTGGCAATGGCGCGCAGGCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCAGCTTCTCGGCAATGGCGCGCAGCCGGCCCTCTGCCGGGCCCGCCTTGCCT  >  AM260480/201951‑202208                                                                                                                                   |                                                                                                                                gTGGCAATGGCGCGCAGGCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTg                                                                                                                              >  1:226823/1‑134 (MQ=255)          gcgcgcAGGCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCgg                                                                                                                      <  2:1071690/133‑1 (MQ=255)               cAGGCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCa                                                                                                                <  2:847357/134‑1 (MQ=255)               cAGGCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCa                                                                                                                <  2:1047516/134‑1 (MQ=255)               acggtcacaggcaaggcgggcccggcagagggccggctgcgcgccattgccgagaagctgcagcaggaccgcccgctgcgccaggaccgcttcgaacactacgtcaatgcactggcCCTGCAGCCCGGGCTGCa                                                                                                                >  1:479224‑M1/117‑134 (MQ=255)                cggtcacaggcaaggcgggcccggcagagggccggctgcgcgccattgccgagaagctgcagcaggaccgcccgctgcgccaggaccgcttcgaacactacgtcaatgcactggcCCTGCAGCCCggg                                                                                                                     <  1:1077407‑M1/13‑1 (MQ=255)                cggtcacaggcaaggcgggcccggcagagggccggctgcgcgccattgccgagaagctgcagcaggaccgcccgctgcgccaggaccgcttcgaacactacgtcaatgcactggcCCTGCAGCCCggg                                                                                                                     >  2:1077407‑M1/116‑128 (MQ=255)                aGGCCTGGCGACATGTATTCAATGCTGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAg                                                                                                               >  1:1053706/1‑134 (MQ=255)                aGGCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAg                                                                                                               <  1:723130/134‑1 (MQ=255)                 ggtcacaggcaaggcgggcccggcagagggccggctgcgcgccattgccgagaagctgcagcaggaccgcccgctgcgccaggaccgcttcgaacactacgtcaatgcactggcCCTGCAGCCCGGGCTGCAgg                                                                                                              >  2:1069666‑M1/115‑134 (MQ=255)                 ggCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAgg                                                                                                              <  2:965513/134‑1 (MQ=255)                 ggCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAgg                                                                                                              <  2:1053706/134‑1 (MQ=255)                                     aTGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAgtg                                                                                          >  1:145964/1‑134 (MQ=255)                                             gCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCa                                                                                                                <  1:14830/104‑1 (MQ=255)                                             gCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCa                                                                                                                >  2:14830/1‑104 (MQ=255)                                               cGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCgg                                                                                >  1:482044/1‑134 (MQ=255)                                                          ggCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAg                                                                     <  2:226823/134‑1 (MQ=255)                                                           gCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAgc                                                                    <  2:482044/134‑1 (MQ=255)                                                                             gcaggaccgcccgctgcgccaggaccgcttcgaacactacgtcaatgcactggcCCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCg                                                                                      >  2:962741‑M1/55‑98 (MQ=255)                                                                             gCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCAGc                                                  <  2:145964/134‑1 (MQ=255)                                                                              cACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCAGCt                                                 >  2:589167/1‑134 (MQ=255)                                                                                        cAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCAGCTTCTCGGCAAt                                       >  2:784278/1‑134 (MQ=255)                                                                                                         ggtCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCctg                                                         <  1:576002/99‑1 (MQ=255)                                                                                                         ggtCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCctg                                                         <  1:975848/99‑1 (MQ=255)                                                                                                         ggtCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCctg                                                         >  2:576002/1‑99 (MQ=255)                                                                                                         ggtCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCctg                                                         >  2:975848/1‑99 (MQ=255)                                                                                                           cgaacactacgtcaatgcactggcCCTGCAGCCCGGGCTGc                                                                                                                 >  2:783488‑M1/25‑41 (MQ=255)                                                                                                           cgaacactacgtcaatgcactggcCCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCctgc                                                        >  1:962741‑M1/25‑98 (MQ=255)                                                                                                                        aatgcactggcCCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCAGCTTCTCGGCAATGGCGCGCAGCCGGCCCTCTGCCGGGCCCGCCt       <  2:578967‑M1/123‑1 (MQ=255)                                                                                                                             ccgccACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCAGCTTCTCGGCAATGGCGCGCAGCCGGCCCTCTGCCGGGCCCGCCTTGCCt  >  2:172458/1‑134 (MQ=255)                                                                                                                              cgccACCTGCAGCCCGGGCTGCAGGGCCAGTGCAt                                                                                                    >  2:902974/1‑35 (MQ=255)                                                                                                                              cgccACCTGCAGCCCGGGCTGCAGGGCCAGTGCAt                                                                                                    <  1:902974/35‑1 (MQ=255)                                                                                                                                ggcCCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCa                                                    <  2:600639‑M1/78‑1 (MQ=255)                                                                                                                                ggcCCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCa                                                    >  1:600639‑M1/4‑81 (MQ=255)                                                                                                                                   |                                                                                                                                GTGGCAATGGCGCGCAGGCCTGGCGACATGTATTCAATGCCGGTGCCGAAGGTGAACGGCTTGCGCTTGACGTCGAGCACCATCTCGCAGGCGCCGTCGGTGGTGGTCGGCGGCTGCACCGTGGCCGCCACCTGCAGCCCGGGCTGCAGGGCCAGTGCATTGACGTAGTGTTCGAAGCGGTCCTGGCGCAGCGGGCGGTCCTGCTGCAGCTTCTCGGCAATGGCGCGCAGCCGGCCCTCTGCCGGGCCCGCCTTGCCT  >  AM260480/201951‑202208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.