| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AY305378 | = 94337 | NA (NA) | 29 (1.070) | 23/208 | 0.1 | 100% | noncoding (1313/1313 nt) | ISAE1 | repeat region |
| ? | AY305378 | = 445950 | 0 (0.000) | intergenic (‑20/+31) | cbbFp/cbbEp | fructose‑1,6‑bisphosphate/ribulose‑5‑phosphate 3‑epimerase | |||||
AAGTCGACTTCCCGGACGAACCACGGATCGCTTATGCCAAGGGCTGCTTCAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGTTTC > AY305378/94207‑94467 | aaGTCGACTTCCCGGACGAACCACGGATCGCTTATGCCAAGGGCTGCTTCAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGcac < 1:1051147/133‑1 (MQ=11) aTGCCAAGGGCTGCTTCAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACgg < 2:172585/132‑1 (MQ=255) aGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACt < 1:506109/134‑1 (MQ=255) cGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCg > 1:694487/1‑108 (MQ=255) cGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCg < 2:694487/108‑1 (MQ=255) cGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCcgac > 2:651453/1‑134 (MQ=255) ctctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCcgacga < 1:435006/134‑1 (MQ=255) ctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTc < 2:634699/75‑1 (MQ=255) ctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTc > 1:634699/1‑75 (MQ=255) ctTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAgg > 2:968166/1‑134 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCccgc < 2:948569/77‑1 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCccgc > 1:948569/1‑77 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTgg > 1:147032/1‑116 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTgg < 2:147032/116‑1 (MQ=255) tgttgCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAgg > 1:403764/1‑132 (MQ=255) ctctTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAAcc < 2:395917/93‑1 (MQ=255) ctctTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAAcc > 1:395917/1‑93 (MQ=255) tGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGaa > 1:208011/1‑82 (MQ=255) tGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGaa < 2:208011/82‑1 (MQ=255) tGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGa > 1:372742/1‑134 (MQ=255) aaaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc < 1:968166/133‑1 (MQ=255) aaaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc < 2:403764/133‑1 (MQ=255) aaaCCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGAc < 2:535309/133‑1 (MQ=255) ccGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGAcg > 1:686656/1‑134 (MQ=255) aTACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGt < 2:998753/134‑1 (MQ=255) cTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGc > 2:141105/1‑131 (MQ=255) cTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGc > 1:1062520/1‑131 (MQ=255) gAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCgaga > 1:982093/1‑132 (MQ=255) tCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGac > 2:747715/1‑58 (MQ=255) tCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGac < 1:747715/58‑1 (MQ=255) agGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTCCTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGTTTc > 1:482624/1‑134 (MQ=255) | AAGTCGACTTCCCGGACGAACCACGGATCGCTTATGCCAAGGGCTGCTTCAAACAGTTTGCTATGCATCGCTCTTGTTGCTCTTTACCTGAAACCCGCCACGATACCACCCACTTGAAATTCAAAAGAGGCACAATTCCTATTACTCCCGCCGGATGATAGACGGGCGAACCGTCGACACTGCCCACTGGGCCAGCCCCGACGAGGGAGCGCTTACTGGTGACCGACGCGTCCTGTACCTTGCGAGAAAGCAGGCGGTTTC > AY305378/94207‑94467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |