New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AY305378 | = 94337 | NA (NA) | 29 (1.070) | 23/208 | 0.1 | 100% | noncoding (1313/1313 nt) | ISAE1 | repeat region |
? | AY305378 | = 445950 | 0 (0.000) | intergenic (‑20/+31) | cbbFp/cbbEp | fructose‑1,6‑bisphosphate/ribulose‑5‑phosphate 3‑epimerase |
GCGACGTTGAGAATCAGGCCGTTGAAGCCACCGCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGGCTATGTATTCTTGTGTGGTGCCGTGCGGGCTACGTGATGGTGGCGGCCTCGCGCAAGCGGTGCAGGATGCCCCGGTAGCCGCCGTCGGCATCCGGCGCGCCGAACACGGCGCTGCCGGCCACGAAGGTGTC > AY305378/445827‑446082 | gCGACGTTGAGAATCAGGCCGTTGAAGCCACCGCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctctttt > 2:29034‑M2/1‑124 (MQ=255) gCGACGTTGAGAATCAGGCCGTTGAAGCCACCGCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctctttt < 2:666769‑M2/133‑10 (MQ=255) agaATCAGGCCGTTGAAGCCACCGCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaag > 2:914727‑M2/1‑115 (MQ=255) gTTGAAGCCACCGCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtggg > 2:241881‑M2/1‑104 (MQ=255) gTTGAAGCCACCGCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtggg < 1:241881‑M2/127‑24 (MQ=255) aGCCACCGCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggc < 2:237424‑M2/134‑36 (MQ=255) gCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttc > 1:666769‑M2/1‑92 (MQ=255) ggCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcagg < 2:295627‑M2/134‑46 (MQ=255) gCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggt > 1:237424‑M2/1‑88 (MQ=255) gcggcggcgTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaaca > 2:778965‑M2/1‑77 (MQ=255) tCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagc > 1:295627‑M2/1‑48 (MQ=255) aGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcag < 1:567729‑M2/134‑89 (MQ=255) aGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcag < 1:237978‑M2/134‑89 (MQ=255) aGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaag > 1:404306‑M2/1‑46 (MQ=255) aGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaag < 2:404306‑M2/65‑20 (MQ=255) tCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcag < 1:447256‑M2/130‑89 (MQ=255) tCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcag > 2:447256‑M2/1‑42 (MQ=255) tCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggcttcaggtaaagagcaacaagagcgatgcatagcaaaatgtttgaagcagccct < 2:449037‑M2/134‑93 (MQ=255) cTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcata < 2:685315‑M2/105‑71 (MQ=255) cTGGACTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcata > 1:685315‑M2/1‑35 (MQ=255) cTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcagcccttggcataagcga < 2:684993‑M2/134‑105 (MQ=255) cTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaa < 2:753743‑M2/78‑49 (MQ=255) cTTCGGGCATGACAGGTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaa > 1:753743‑M2/1‑30 (MQ=255) gTCTCCTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcagcccttggcataagcgatccgtggttcgtccg < 1:702528‑M2/134‑120 (MQ=255) ccTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagag < 1:193358‑M2/63‑53 (MQ=255) ccTATAGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagag > 2:193358‑M2/1‑11 (MQ=255) aGATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcagcccttggcataagcgatccgtggttcgtccgggaagtcga < 2:23558‑M2/134‑129 (MQ=255) gATTGgcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcagcccttggcataagcgatccgtggttcgtccgggaagtcgac > 2:702528‑M2/1‑5 (MQ=255) ggcctcttttgaatttcaagtgggtggtatcgtggcgggtttcaggtaaagagcaacaagagcgatgcatagcaaactgtttgaagcagcccttggcataagcgatccgtggttcgtccgggaagtcgacttc < 1:1071738‑M2/133‑133 (MQ=255) | GCGACGTTGAGAATCAGGCCGTTGAAGCCACCGCTGGCGTCCGGATAGCGGCGGCGTTCCTCGATCAGGAACTGCGTCAGGGTCATCCGCTGGACTTCGGGCATGACAGGTCTCCTATAGATTGGCTATGTATTCTTGTGTGGTGCCGTGCGGGCTACGTGATGGTGGCGGCCTCGCGCAAGCGGTGCAGGATGCCCCGGTAGCCGCCGTCGGCATCCGGCGCGCCGAACACGGCGCTGCCGGCCACGAAGGTGTC > AY305378/445827‑446082 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |