| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 1,464,441 | Δ37 bp | coding (125‑161/552 nt) | h16_A1354 → | conserved hypothetical protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 1464441 | 1464477 | 37 | 23 [1] | [0] 22 | h16_A1354 | conserved hypothetical protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 1464440 | 1 (0.040) | 22 (0.810) | 18/212 | 0.4 | 97.8% | coding (124/552 nt) | h16_A1354 | conserved hypothetical protein |
| ? | AM260479 | 1464478 = | 0 (0.000) | coding (162/552 nt) | h16_A1354 | conserved hypothetical protein | |||||
GATGCCATGCACGCCTGTGACCTGTGTCATCAGCTGGTGGGCGAACCGTCCAGCAGTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAACTGCTGGTGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGTCGAC > AM260479/1464311‑1464567 | gaTGCCATGCACGCCTGTGACCTGTGTCATCAGCTGGTGGGCGAACCGTCCAGC‑GTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctg < 2:285393‑M1/134‑6 (MQ=255) ccATGCACGCCTGTGACCTGTGTCATCAGCTGGTGGGCGAACCGTCCAGC‑GTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacg > 1:512028‑M1/1‑125 (MQ=255) ccATGCACGCCTGTGACCTGTGTCATCAGCTGGTGGGCGAACCGTCCAGC‑GTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacg > 1:525485‑M1/1‑125 (MQ=255) tgACCTGTGTCATCAGCTGGTGGGCGAACCGTCCAGC‑GTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcc < 1:256727‑M1/133‑22 (MQ=255) cTGTGTCATCAGCTGGTGGGCGAACCGTCCAGC‑GTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggat < 2:388757‑M1/134‑27 (MQ=255) ggtggGCGAACCGTCCAGC‑GTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacgg > 1:506153‑M1/1‑94 (MQ=255) aaCCGTCCAGC‑GTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggt < 1:477985‑M1/134‑49 (MQ=255) cGTCCAGC‑GTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgag < 1:357321‑M1/134‑52 (MQ=255) ccgccACACGAGCACCGGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgagccgccgaata < 1:546828‑M1/133‑62 (MQ=255) ccACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgg > 1:130006‑M1/1‑69 (MQ=255) ccACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgg < 2:130006‑M1/79‑11 (MQ=255) gCCTCTGGCATTGCGGCCATGAGCAACCGGTGCCAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgag > 2:97506‑M1/1‑51 (MQ=255) gCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgag < 1:97506‑M1/102‑52 (MQ=255) tGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgagccgccgaatatgtggcgaatgggcccgcgcccggt < 2:512028‑M1/132‑87 (MQ=255) ggCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgagccgccgaatatgtggcgaatgggcccgcgcccggtcga > 2:59726‑M1/1‑45 (MQ=255) cATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggttagccgccgaatatgtggcgaatgggcccgcgcccggtcgact < 2:1055177‑M1/134‑92 (MQ=255) gCCATGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgagccgccgaatatgtggcgaatgggcccgcgcccggtcgactggcctga > 1:413323‑M1/1‑36 (MQ=255) tGAGCAACCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggat < 2:1013410‑M1/58‑27 (MQ=255) tGAGCAACCGGTGCAAGGTCGACAGCCGCTGGCGCTGCACGGGCTGCGGCGCCTGGAt > 1:1013410/1‑58 (MQ=21) aCCGGTGCAAGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgagccgccgaatatgtggcgaatgggcccgcgcccggtcgactggcctgataatgacggc > 1:32572‑M1/1‑26 (MQ=255) aGGTCGACAGCCGCTGGcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgagccgccgaatatgtggcgaatgggcccgcgcccggtcgactggcctgataatgacggctgagcagg > 2:676943‑M1/1‑17 (MQ=255) agccgctggcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgagccgccgaatatgtggcgaatgggcccgcgcccggtcgactggcctgataatgacggctgagcaggcatggccgc < 2:413323‑M1/130‑126 (MQ=255) ccgctggcgctgcacgggctgcggcgcctggatgtaccagagcacggcattgggtgagccgccgaatatgtggcgaatgggcccgcgcccggtcgactggcctgataatgacggctgagcaggcatggccgcgc > 2:1112376‑M1/3‑7 (MQ=255) | GATGCCATGCACGCCTGTGACCTGTGTCATCAGCTGGTGGGCGAACCGTCCAGCAGTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAACTGCTGGTGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGTCGAC > AM260479/1464311‑1464567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |