Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	1829135	1829160	26	3 [2]	[2] 3	h16_A1678	phage integrase family protein

GCGGGCGCAGGGCCAGTCGTCGCGCGGCATCCTCGGGCGCATCCGCCGCCAGCTTGCCGCATACGCCCGCAGCCGCCAGCGCGAGGACCTGGCTGCGCTGTTTGAAATTTCCGCGGCCGAGCGGGCGGAGAAGGGCAGGGCAGCGG  >  AM260479/1829001‑1829146                                                                                                                                      |             gCGGGCGCAGGGCCAGTCGTCGCGCGGCATCCTCGGGCGCATCCGCCGCCAGCTTGCCGCATACGCCCGCAGCCGCCAGCGCGAGGACCTGGCTGCGCTGTTTGAAATTTCCGCGGCCGAGCGGGCGGAGAagg              <  2:286897/134‑1 (MQ=255)      cgcAGGGCCAGTCGTCGCGCGGCATCCTCGGGCGCATCCGCCGCCAGCTTGCCGCATACGCCCGCAGCCGCCAGCGCGAGGACCTGGCTGCGCTGTTTGAAATTTCCGCGGCCGAGCGGGCGGAGAagggcagg         <  2:450874/134‑1 (MQ=255)             ccAGTCGTCGCGCGGCATCCTCGGGCGCATCCGCCGCCAGCTTGCCGCATACGCCCGCAGCCGCCAGCGCGAGGACCTGGCTGCGCTGTTTGAAATTTCCGCGGCCGAGCGGGCGGAGAAGGGCAGGGCAGCgg  <  2:953631/134‑1 (MQ=255)                                                                                                                                      |             GCGGGCGCAGGGCCAGTCGTCGCGCGGCATCCTCGGGCGCATCCGCCGCCAGCTTGCCGCATACGCCCGCAGCCGCCAGCGCGAGGACCTGGCTGCGCTGTTTGAAATTTCCGCGGCCGAGCGGGCGGAGAAGGGCAGGGCAGCGG  >  AM260479/1829001‑1829146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑