Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	1829135	1829160	26	3 [2]	[2] 3	h16_A1678	phage integrase family protein

CCATGCCATCGAGACGCTGCGTACGCTGCCGCCGCCGGCACCGGCAATCAGCGACGACATCGGCTTGTGGCTGGCGCCGCGCACGGTCGCCGCGCTGCGCGCGCAGGGCATCGACACGCTGGCGGCACTGACCGTTCGGGTGCCGCG  >  AM260479/1829148‑1829294              |                                                                                                                                      ccATGCCATCGAGACGCTGCGTACGCTGCCGCCGCCGGCACCGGCAATCAGCGACGACATCGGCTTGTGGCTGGCGCCGCGCACGGTcg                                                            <  1:638937/89‑1 (MQ=255) ccATGCCATCGAGACGCTGCGTACGCTGCCGCCGCCGGCACCGGCAATCAGCGACGACATCGGCTTGTGGCTGGCGCCGCGCACGGTcg                                                            >  2:638937/1‑89 (MQ=255)              aCGCTGCGTACGCTGCCGCCGCCGGCACCGGCAATCAGCGACGACATCGGCTTGTGGCTGGCGCCGCGCACGGTCGCCGCGCTGCGCGCGCAGGGCATCGACACGCTGGCGGCACTGACCGTTCGGGTGCcgcg  >  2:420197/1‑134 (MQ=255)              |                                                                                                                                      CCATGCCATCGAGACGCTGCGTACGCTGCCGCCGCCGGCACCGGCAATCAGCGACGACATCGGCTTGTGGCTGGCGCCGCGCACGGTCGCCGCGCTGCGCGCGCAGGGCATCGACACGCTGGCGGCACTGACCGTTCGGGTGCCGCG  >  AM260479/1829148‑1829294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑